- Probe CUST_26188_PI390587928
- Source Contig U35_15171
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26188_PI390587928 | Hv_44K_v2 | CGCAAATCAGTAAATATCCTTAATTAATTACTAATGTTCTAAGCAACATGCTGCAAGCGG | 547 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_37052.3 | 839 | 6e-24 | 763 - 821 | 100 | 59 / 59 | plus | ABC00383 ABC00931 ABC00996 ABC52622 |
| MLOC | MLOC_37052.2 | 678 | 6e-24 | 564 - 622 | 100 | 59 / 59 | plus | ABC00383 ABC00931 ABC00996 ABC52622 |
| JLOC1 | JLOC1_23941.2 | 1696 | 3e-24 | 651 - 709 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC50806 | 695 | 6e-22 | 1 - 57 | 98 | 57 / 58 | minus | |
| Harvest35 | U35_15171 | 620 | 3e-25 | 548 - 607 | 100 | 60 / 60 | plus |
Contig Sequence (620 bp)
>U35_15171 620 Hv_44K_v2 GCACGAGGGAGCGAGTGAGCGAGTGTTGCACAAACAACATGTCTGCCTGTGTCATGGCAT CTTTGGCTCTGAAACCATCTTCCTCTCCTCTGTTACAACGATCCAAGCTTGGAGGCGTGC GACCATCGGCGAGGCCGTCGTTGGTCATAGTGGCCAAGAAGGCGAAGAAGGTCCAGACTG CCCAACCCTACGGGCCTGGTGGTGGAGTGGCGTTCAAGGAAGGCGTCGATGCGTCTGGAA GGGTAGCCAAGGGGAAGGGTGTTTACCAGTTTGCCGACAAGTATGGAGCAAATGTTGATG GGTACAGCCCTATATACACACCAGATCTCCAAGTGGCGACGTTTATGTTGGAGGAAAGAC GGGGTTGTTTCTCTGGGCAGTGACTCTTGCTGGAATTCTGCTGGGCGGTGCTCTTCTTGT CTACAGTACTAGCGCCTTGGCTTCCTGAAGCCTATGTGCAGCAAACCAAGCTATGCACCA AACGATGTGTATAATAGTGCGGATTATAACCGTCAGGACATATGTAATGGATACAAATAT CACTACCCGCAAATCAGTAAATATCCTTAATTAATTACTAATGTTCTAAGCAACATGCTG CAAGCGGTATTAAGTTTCAG
Homology of Contig U35_15171 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |