barSeed - Barley Seed Development Database

Probe CUST_2616_PI390587928

Source Contig U35_27092

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2616_PI390587928	Hv_44K_v2	TCTCTGTTGTATAGACAGTGAGTGAGTAAGAAGTGAACATTGGCTCTTGATGTTGCCCCC	419	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.512	2.040	3.174	1.523	0.621	0.650
Raw	58.882	384.410	524.641	402.601	54.751	64.069

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51215.1	2460	6e-24	2260 - 2318	100	59 / 59	plus	None
MLOC	MLOC_51215.2	2069	6e-24	1870 - 1928	100	59 / 59	plus	None
JLOC1	JLOC1_32701.1	1603	3e-24	65 - 123	100	59 / 59	minus
JLOC1	JLOC1_32702.1	2312	3e-24	2112 - 2170	100	59 / 59	plus
Harvest35	U35_27092	500	3e-25	420 - 479	100	60 / 60	plus

Contig Sequence (500 bp)

>U35_27092 500 Hv_44K_v2
TCATCACTCCCCTCCGGCGTCTCGCTGTGCCTGATGTACAACTGCATGGTGCCGCCGGTG
TACGCGCCGTGCCCGATTAAGGCCGGCACGCAGAACACGCGGCCGGCCGACCAGTGCCCG
GAATGGAGGGGCTAACCAAGATGGCTGCTGGCTGCTGCTCCAAGAACCAGAAGCAGAAGG
CAGGACAACACCATTGCCGCCGGATCGCCTCTGATCGGGGAGGAGGACACAAGAATGGAG
GAGATTGCAAACGGTGGTCTCTGATTCTTTGATTAAATTTGTCAAGTTTACTACTGTGGA
TTATTATTCTTTTTGTGAGGGAGGGGATAGTCACAGACACAAGAAGTTGGTGCTTTAATA
ATCGTGGTTTATATAGGTGTAATTTTTTTGTTTAGCTGGTGTAAGTGTATGTGCTTGTGT
CTCTGTTGTATAGACAGTGAGTGAGTAAGAAGTGAACATTGGCTCTTGATGTTGCCCCCC
CCCCCAAAAAAAAAAAAAAA

Homology of Contig U35_27092 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None