barSeed - Barley Seed Development Database

Probe CUST_26163_PI390587928

Source Contig U35_27159

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26163_PI390587928	Hv_44K_v2	CCTGCTTCACATTCTCAGTTTATATAAACTTCATCCACGATGTTGTACGCTACCATATAT	798	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58851.1	2870	2e-24	49 - 108	100	60 / 60	minus	ABC22838 ABC24690
JLOC1	JLOC1_38257.1	2873	8e-25	2728 - 2787	100	60 / 60	plus
Harvest21	ABC22838	858	3e-25	1 - 60	100	60 / 60	minus	ABC22838
Harvest35	U35_27159	858	3e-25	799 - 858	100	60 / 60	plus

Contig Sequence (858 bp)

>U35_27159 858 Hv_44K_v2
ACAATGGCGGAGAAGGGCGTGAAGGTGTTCGGCATGTGGGCGAGCCCCATGGTCATGCGG
GTGGAGTGGGCGCTTCGGCTCAAGGGCGTCGTGTACTAGTACGTCGACGAGGACCTCGCC
AGCAAGAGCGACGCGCTGCTCCGCCGCAACCCGGTGACCAAGAAGGTGCCGGTGCTGGTC
CACGACGGCTAGCCGATCGTGGAGTCCACCATCATCGTCGAGTACATCGACGAGGCGTGG
AAGGACGGCTACCCCATCATGCCGGCCGACCCCCACGACCGGGCTCAGGCGAGGTTCTGG
GCCAGGTTCGCCGACGACAAGTGCAACGCCGCCATCTACCCGGTCTTCACGGCGACCGGC
AAGGCGCAGCGGGAGGTGGTGCGCGAGGCACAGCGGTGCCTGAAGACGCTGGAGACGGCC
CTGGAGGGGAAGAAGTTCTTCGGGGGCGACGCCATCGGCTACCTCGACGTCGTGGTTGGG
TGGTACGCGTACTGGCTGCCGGTCATCGAGGAGGTCTCCGGCGCCAGCATCGTCACCGAC
GAGGAGCTCCCTCTGATGAAGGCCTGGTTCGACCGGTTCCTGGCCGTCGACGTGGTGAAG
GACACCCTGCCACCCAGGGACAAGCTCCTGGCGCTCAACATGGCTCGCCGTGCTCAGCTC
CTCTCGGCCTAGAGCTTGTACTACTAGTTCCGGGCCTTCCCAGCTACGTAACGCAAGCTT
CTATGCCATGGATAAATAAGTGTTGCGCATTTGCACATTGTGCAACAAATGTTTGGAAGT
TGAAACTTGTTTCAGCCGCCTGCTTCACATTCTCAGTTTATATAAACTTCATCCACGATG
TTGTACGCTACCATATAT

Homology of Contig U35_27159 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g29200.1	224	5e-130	protein\|glutathione S-transferase, putative, expressed
Brachypodium v1_2	Bradi4g32610.1	223	2e-141
Arabidopsis v10	AT3G09270.1	224	3e-61	\| Symbols: ATGSTU8, GSTU8 \| glutathione S-transferase TAU 8 \| chr3:2848407-2849226 REVERSE LENGTH=224