- Probe CUST_26161_PI390587928
- Source Contig U35_39131
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26161_PI390587928 | Hv_44K_v2 | GAAATGGACACATACCATATCGGGATTCAAAGCTCACACGCATATTACAGCCTTCTCTGG | 498 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.971 | 2.959 | 1.236 | 0.573 | 0.583 | 0.365 |
| Raw | 51.445 | 74.978 | 28.702 | 17.653 | 6.809 | 2.897 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363795 | 3787 | 2e-24 | 1629 - 1688 | 100 | 60 / 60 | plus | ABC17486 |
| MLOC | MLOC_77511.2 | 3298 | 2e-24 | 1079 - 1138 | 100 | 60 / 60 | plus | ABC17486 |
| MLOC | MLOC_77511.5 | 3532 | 2e-24 | 1336 - 1395 | 100 | 60 / 60 | plus | ABC17486 |
| MLOC | MLOC_77511.3 | 3709 | 2e-24 | 1491 - 1550 | 100 | 60 / 60 | plus | ABC17486 |
| MLOC | MLOC_77511.4 | 3673 | 2e-24 | 1455 - 1514 | 100 | 60 / 60 | plus | ABC17486 |
| MLOC | MLOC_77511.1 | 3233 | 2e-24 | 1028 - 1087 | 100 | 60 / 60 | plus | ABC17486 |
| JLOC1 | JLOC1_51697.3 | 3504 | 8e-25 | 1162 - 1221 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51697.2 | 3642 | 8e-25 | 1300 - 1359 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51697.1 | 3390 | 8e-25 | 1048 - 1107 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC35125 | 600 | 3e-25 | 499 - 558 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_39131 | 600 | 3e-25 | 499 - 558 | 100 | 60 / 60 | plus |
Contig Sequence (600 bp)
>U35_39131 600 Hv_44K_v2 GCACAGTATCAGACATTTATGATTACATTGGCCGGCACGAGGAGAGAGCATTTGTGTTGA AATTCTCAGCGATAGAAATATATAACGAAGTTGTACGGGATCTTCTTAGTTCAGAAAACA CTTCTCTTAGACTTTGGGATGACGCAGAGAAGGGGACTTATGTAGAGAACCTTAAAGAAG TGATACTGAGGGACTGGAACCACCTCAAGGAACTTATTTCTGTGTGTGAAGCTCAAAGGA GAACTGGAGAGACATACTTAAACGAAAACAGCTCCAGATCGCATCAAATCCTTAAATTGA CTATCGAAAGTTCTGCTCGTGAATTCTTGGGCAAGGACAAGTCAACGACACTTGCGGCTA GTGTGAACTTTGTCGATTTGGCAGGAAGTGAGCGTGCATCTCAGGCACTGTCAGCTGGTG CTAGGCTGAAGGAAGGTTGCCATATTAATAGAAGTTTACTTACCCTAGGAACTGTCATCC GTAAACTAAGCAAGGTAAGAAATGGACACATACCATATCGGGATTCAAAGCTCACACGCA TATTACAGCCTTCTCTGGGAGGTAACGCAAGGACAGCATTCATTTGCACAATGAGCCCAG
Homology of Contig U35_39131 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g45580.1 | 946 | 2e-124 | protein|kinesin motor domain containing protein, expressed |
| Brachypodium v1_2 | Bradi5g17020.3 | 730 | 4e-130 | |
| Arabidopsis v10 | AT2G21300.1 | 862 | 2e-101 | ATP binding microtubule motor family protein | chr2:9114396-9118292 REVERSE LENGTH=862 |