barSeed - Barley Seed Development Database

Probe CUST_26155_PI390587928

Source Contig U35_15183

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26155_PI390587928	Hv_44K_v2	GCTTTTCAAGTGTGAATTACTATAAACGACAATACTCCTCCTTATATATATACGACGAGG	1922	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20110.1	2444	3e-22	2323 - 2378	100	56 / 56	plus	ABC06411
JLOC1	JLOC1_13952.1	2200	1e-22	2041 - 2096	100	56 / 56	plus
Harvest21	ABC06411	1196	3e-25	1098 - 1157	100	60 / 60	plus	ABC06411
Harvest35	U35_15183	2035	3e-25	1923 - 1982	100	60 / 60	plus

Contig Sequence (2035 bp)

>U35_15183 2035 Hv_44K_v2
ACGCTTCCGGTTCCGGCGCCTCGGTCCAACTCACACCAAAGGCGACACTCGACGCGAGTA
CGTCTACGTCTACGTACGACTCGAGATCCATGGAGTCTGCGCCGGCGGCGGCGTTCATGG
AGCGGGAGCGCCTCACGGCGGAGGTGACCTTCTCCGGGGACGCGCAGGCTGCGGCGTCCA
CTGAGGGGCTGCCCAGCATCATCATCAAGATCCGGCGTCGCCTCCCGGACTTCGCACGCT
CCGTCAACCTCAAGTACGTCAAGCTCGGGATCCGGCACGGCGGCAGCCTCACGTCCTACC
TGCCCATGCTCTGCGTGCCGGTGCTCGCCGCGGCGGCATACTCCTTCGTCCGCCTCGACG
TCATCTACCTCTCCATCGACCTGCTCAGCTGCGTCGCCTGGCTCGGCACCGCCATGCTGC
TCCTCACCGTCTACTACATGAAGCGGCCTCGCCCGGTGTACCTCGTCGAGTTCGCGTGCT
ACAAGCCGGAGGACCAGAACAAGATCTCCAAGGAGGCCTTCCTCGACATGACCGAGAGCA
CCGGCTGCTTCAACGACGAGACGCTCGCGTTCCAGACCAAGATCACCACCCGCTCCGCTC
TCGGCGACGAGACCTACCTGCCCTCGGGCGTCCAGGCGCGCCCGCCGAGGCTCAACATGG
CCGAGGCGCGGCTGGAGGCCGAGGCTGTCATGTTCGGCTGCCTTGACGCTCTGTTCGCGT
CCACCGGGATCGACCCGCGCCGCGACGTGCGCATCCTCATCGTCAACTGCAGCCTGTTCA
ACCCGACGCCGTCGCTGGCGTCCATGATCATCCACCATTACAAGATGCGGGAGGACGTCA
AGTCGTTCAACCTGGGCGGCATGGGGTGCAGCGCCGGCCTCATCGCCATCGACCTCGCCA
AGGACATGCTCCAGGCCAACCCCAACTCGTACGCGGTCGTGCTCAGCACCGAGAACATCA
CCCTCAACTGGTACTTTGGGAACGACCGCTCCATGCTGCTCTCCAACTGCATCTTCCGCA
TGGGCGGCGCCGCGGCCCTGCTCTCGAACCGGCGCGCCGACGCCGGGCGCGCCAAGTACC
GCCTCCTCCACACGGTGCGGACGCACAAGGGCGCCACGGACGAGTGCTTCAACTGCGTGT
ACCAGCGCGAGGACGATGTGGGCAAGGTGGGCGTGTCGCTGGCGCGGGAGCTCATGACGG
TGGCCGGCGACGCGCTCAAGACCAACATCACCACGCTGGGGCCACTGGTGCTGCCCCTCA
GCGAGCAGCTCAAGTTCCTCAAGTCGCTCATGATGCGCCGCGTGTTCCGCGCCAAGGGGG
TGCGCCCCTACATCCCCAACTTCCGGCGCGCGTTCGAGCACTTCTGCGTGCACGCCGGCG
GGCGCGCCGTGCTGGAGGAGGTGCAGCGCAGCCTGAGCCTGGAGGACAAGGACATGGAGC
CCAGCAGGTGCGCGCTGCACCGCTTCGGCAACACCAGCAGCAGCTCGCTCTGGTACGAGC
TCGCCTATGCCGAGGCCAAGGGCCGGGTGAAGCGCGGCAACCGCGTCTGGCAGATCGGCT
TCGGGTCGGGCTTCAAGTGCAACAGCGCCGTGTGGCGCGCGCTCCGCGACGTGCCGCCCG
TGTCGCCCCCGCACGCCGGCGCCGCTGCGCCTGGACCGGAGAAGAAGGCGGCCTGCAACC
CGTGGGTGGACTGCGTCGCCAAGTACCCGCCCAAGGCGTACGTCTGATGATCATTACGCC
GCCGCTGCTGCTGCTGCATAACTCCACACGAAGATTACATGATTCTTTTCTCCCCACAGC
AGTGTAAAACATCACAAGTGCGGTGGGGAGATTATATACTCCTACTATACTTTTTCTGTA
TTTCCTTTCCCGTAGGGTGGCTGTAATTCAGGTTCCATGGGCGAGCAGTGCCGTTGTTTT
CAGCTTTTCAAGTGTGAATTACTATAAACGACAATACTCCTCCTTATATATATACGACGA
GGTTTCATTCAAGTTATGAATATGATTGTATGATCTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15183 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g14170.1	533	protein\|3-ketoacyl-CoA synthase, putative, expressed
Brachypodium v1_2	Bradi1g68430.1	537
Arabidopsis v10	AT1G01120.1	528	\| Symbols: KCS1 \| 3-ketoacyl-CoA synthase 1 \| chr1:57392-58978 REVERSE LENGTH=528