barSeed - Barley Seed Development Database

Probe CUST_26154_PI390587928

Source Contig U35_15184

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26154_PI390587928	Hv_44K_v2	TTACCAAGTCCCAATAATCTAGCTCTAGCTCTAGCTTGCTAGCTAGCTACCTCTGGCTTT	1569	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.094	2.162	2.098	0.968	0.503	0.448
Raw	15.279	48.260	39.254	29.475	3.034	3.041

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248520.1	1813	2e-24	1569 - 1628	100	60 / 60	plus	ABC15518 ABC18569 ABC35412
MLOC	MLOC_71209.2	1339	2e-24	1114 - 1173	100	60 / 60	plus	ABC15518 ABC18569 ABC35412
MLOC	MLOC_71209.1	2141	2e-24	1607 - 1666	100	60 / 60	plus	ABC15518 ABC18569 ABC35412
JLOC1	JLOC1_47303.1	1584	8e-25	1259 - 1318	100	60 / 60	plus
Harvest21	ABC35412	482	3e-25	179 - 238	100	60 / 60	minus	ABC35412
Harvest21	ABC15518	898	3e-25	676 - 735	100	60 / 60	plus	ABC15518
Harvest35	U35_15184	1812	3e-25	1570 - 1629	100	60 / 60	plus

Contig Sequence (1812 bp)

>U35_15184 1812 Hv_44K_v2
ACGGTTCTCCAAGGTCAACAAGAGTGAGTGGGGAGAGAGCTAGAGATAGAGGCCGCGCGC
CATCACTACCATGGATCGGCAGCTGCTGAGGACGGTGAAGCAGGCGACGATGGACCACGC
CGGCCTCATGTACCACCGTCTCGTGGGCCACATCCCGCACCTCCTCGCGGTCACGCTGCT
CGCCGTGGTGGCGCCGCAGCTGTCGACGCTCACGCCGGACAAGGCGCGCGCCCTGTGGCT
GTGGGCCACCGTGAACGCGCCGGCGCTGGCCATGGCGTGCTGGGCGGCGGCGCTGGCGGC
GTACACGTACGCGTCGTCGCGGCCGCAGCCGGTCTACCTGGTGGACCTGGCCGGGTACAA
GCCGCCGGCGGAGCTGGAGGCGTCGCGCGCCAAGACCATCGTCCACTTCCAGCGGTGCGG
GCGGTTCAGCGAGCAGAGCATGGCGTTCCAGAAGCGGATGCTGGAGCGGTCCGGCCTCGG
CGAGGCCACGCACTTCCCCATGTCGCTCATCCGGCTGCCCGTGGACATGTGCGACCGGAC
GGCCATGGAGGAGTCCCACGCCGTCATCTTCGGGGTCGTCGACGAGGTCCTCCGCAAGTC
CGGCGTGGCGGCCGGCGACGTGGGGGTGCTCATCTTCAACTCCAGCCTGCTCAGCCCGAC
GCCGTCCTTCACGTCGCTCATCGTCAACCGCTACAGGTTCCGCGACGACGTGGTGACGCA
CAACCTCAGCGGCATGGGGTGCAGCGCCGGCATCATCGCCATCGACCTCGCCAAGCGACT
GCTCCAGGTACACCGGAACACGTACGCGCTGGTGGTGAGCACGGAGAACATCACCCTCAA
CGCCTACATGGGCAACAACCGACCCATGCTGGTGACCAACACGCTCTTCCGCGTCGGCGG
CGCCGCCATCCTCCTCACCAACCGGGCCGGCGACCGGGCGCGCTCCAAGTACCAGCTCAT
CCACACGGTGCGCACCCACCGGGGAGCGCACGACCAGAGCTACGGCTGCGTGACCCAGGA
GGAGGACGAGGTGGGCGAGGTCGGGGTCGCCCTCTCCAAGGAGCTCATGGTGGTCGCTGG
CGAGGCCCTCAAGACCAACATCACCACGCTCGGCCCGCTCGTCCTCCCCATGTCCGAGCA
GCTCCGCTTCCTCGCCACCGTCGTGCTCAAGAAGGTCTTCCGCGCCCAGGTCAAGGCGTA
CCTCCCCGACTTCAAGCTCGCGCTCGACCACTTCTGCATCCACGCCGGCGGCAGGGGCGT
CCTCGACGAGCTCGAGAACAGCCTCAAGCTCACCCCCTGGCACATGGAGCCCTCCCGGAT
GACGCTCTACAGGTTCGGCAACACCTCCAGCAGCTCCCTCTGGTACGAGCTCGCATACTG
CGAGGCCAAGCGCCGGATCAAGAAGGGAGACCGCGTCTGGCAGATCGCATTCGGCTCAGG
CTTCAAATGCAACAGCGCCGTCTGGAGGGCGCTGCGTACCGTCGACGACGCCGGCGAGAA
CCCGTGGATGCAGGACCTCCACCTGCTCCCCGTCGACGTGCCCAAGGTGGTGCCCATCGA
CGAGACCTCTTACCAAGTCCCAATAATCTAGCTCTAGCTCTAGCTTGCTAGCTAGCTACC
TCTGGCTTTCCGTCGTCAGTCCAGCATTATCACCAATTCTCATCAGGCTTATTTAATTTA
TTTTAATTAGGCGGTCGAGGGTTTTTACTCTATGTTTTGATTAATAACTTCTTTTTATCA
TGTACGTAAATCTCAATGAACTAGCAACAAATCCCAAAAGATTAAACTACATGCAAAAAA
AAAAAAAAAAAA

Homology of Contig U35_15184 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g28060.1	524	0.0	protein\|3-ketoacyl-CoA synthase, putative, expressed
Brachypodium v1_2	Bradi3g26827.1	519	0.0
Arabidopsis v10	AT2G26640.1	509	1e-180	\| Symbols: KCS11 \| 3-ketoacyl-CoA synthase 11 \| chr2:11330094-11331623 FORWARD LENGTH=509