barSeed - Barley Seed Development Database

Probe CUST_26151_PI390587928

Source Contig U35_15187

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26151_PI390587928	Hv_44K_v2	CTGAAGCATGCTGTTGTTGTTGTTGTTGTCTTGTGATGATGCGAACTGGTAATAGAGCGG	1392	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	11.807	6.645	1.516	0.661	0.462	0.184
Raw	1265.737	1170.952	223.500	157.291	36.410	16.693

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363491	1591	2e-24	1379 - 1438	100	60 / 60	plus	ABC02949
MLOC	MLOC_59924.1	1686	2e-24	1595 - 1654	100	60 / 60	plus	ABC02949
MLOC	MLOC_59924.2	1561	2e-24	1468 - 1527	100	60 / 60	plus	ABC02949
JLOC1	JLOC1_39038.1	1822	8e-25	1512 - 1571	100	60 / 60	plus
Harvest21	ABC02949	1485	3e-25	1365 - 1424	100	60 / 60	plus	ABC02949
Harvest35	U35_15187	1584	3e-25	1393 - 1452	100	60 / 60	plus

Contig Sequence (1584 bp)

>U35_15187 1584 Hv_44K_v2
GTGCATCCACCGCGCGTGATCCGTTCCTCCCAAATCCCCCAGCCGGCGCCGCAACGTAAA
GACGTAGAACAGCTCCCACAATCCCAAGCTCCGTAGCCTCCCTCCTCGTCAGCGCCGGCC
AAGACCACGCACCGCCAGCAGCAATGGAGACCGTCGCGGCCGCCGGCTACGCGCGCGGGG
CCGCCACGCGCTCCCCGGCCTGCTGCGCCGCCATGTCCTTCTCGCAGTCCTACAGGCCCA
AGGCTGCCAGGCCGGCGACCTCGTTCTACGGCGAGTCGCTGCGGGCGAACACGGCGAGGA
CGTCGTTCCCGGCGGGGAGGCAGTCCAAGGCGGCGAGTCGCGCGGCGCTCACCACCCGGT
GCGCTATCGGCGACAGCCTGGAGGAGTTCCTGACCAAGGCGACGCCGGACAAGAACCTCA
TCAGGCTGCTGATCTGCATGGGGGAGGCGATGAGGACGATCGCCTTCAAGGTCAGGACGG
CGTCCTGCGGCGGCACCGCCTGCGTCAACTCCTTCGGCGACGAGCAGCTCGCCGTCGACA
TGCTCGCCGACAAGCTCCTATTCGAGGCGCTGGAGTACTCCCATGTGTGCAAGTACGCGT
GCTCTGAGGAAGTCCCCGAGCTGCAGGACATGGGTGGCCCCGTCGAAGGCGGATTCAGTG
TGGCGTTCGATCCCCTTGATGGTTCCAGCATCGTGGACACCAACTTCACCGTGGGAACCA
TCTTCGGCGTGTGGCCCGGCGACAAGCTGACGGGCGTCACCGGCGGAGACCAGGTTGCTG
CCGCCATGGGCATCTACGGCCCTCGCACCACCTTCGTCGTCGCCCTCAAGGACTGCCCCG
GGACGCATGAATTCCTTCTTCTCGACGAAGGTAAATGGCAGCATGTCAAGGACACCACAA
GCATTGGAGAAGGGAAGATGTTCTCCCCTGGCAATCTGAGGGCCACATTTGACAACCCTG
ATTACGACAAGCTTGTTAACTACTACGTCAAGGAAAAGTACACGCTGCGTTACACCGGAG
GAATGGTCCCTGACGTCAACCAGATCATCGTGAAGGAGAAGGGCATCTTCACGAACGTGA
CGTCGCCGACGGCCAAGGCGAAGCTGCGGCTGCTGTTCGAGGTGGCGCCGCTGGGGTTCT
TGATAGAGAAGGCCGGCGGGCACAGCAGCGACGGCAAGCAGTCGGTGCTGGACAAGGTGA
TCACCGTCCTCGACGAGCGGACCCAGGTGGCCTACGGCTCCAAGAACGAGATCATCCGCT
TCGAGGAGACCCTCTACGGCTCCTCCAGACTCGCCGCCAGCGCCACCGTCGGCGCCACCG
CCTGATAATCATCCCACCTTCTTTTTTTTTCCCTTCAACCTGAAGGTTAAAACAAGCTGT
CCGTTATAGAGTCTGAAGCATGCTGTTGTTGTTGTTGTTGTCTTGTGATGATGCGAACTG
GTAATAGAGCGGGCGGGCGGACGGCCGGGCTTGCGTACGTCTGCCGCCCTTGTCTCCAAA
AAAAAAAAAAAAAAGCGAGGTGATTGTCCTACACAGTTGTGCGTTTGTGCATGGCAACAC
TTGTGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_15187 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g16680.1	393	protein\|fructose-1,6-bisphosphatase, putative, expressed
Brachypodium v1_2	Bradi2g55150.1	392
Arabidopsis v10	AT3G55800.1	393	\| Symbols: SBPASE \| sedoheptulose-bisphosphatase \| chr3:20709640-20711421 FORWARD LENGTH=393