barSeed - Barley Seed Development Database

Probe CUST_26149_PI390587928

Source Contig U35_15188

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26149_PI390587928	Hv_44K_v2	TTAGAGCGCAGGTTCTGCCATCACCTGTACTGAGGGATTCCCATATAATCTTGTTTACCT	1463	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.699	1.417	1.043	0.880	0.473	0.413
Raw	64162.200	79452.433	54518.333	70083.433	13638.743	12889.600

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53211.1	1317	2e-24	1219 - 1278	100	60 / 60	plus	ABC02907 ABC02908 ABC49883
JLOC1	JLOC1_34163.1	1652	8e-25	1217 - 1276	100	60 / 60	plus
Harvest21	ABC02908	1724	3e-25	1464 - 1523	100	60 / 60	plus	ABC02908
Harvest21	ABC02907	153	3e-25	75 - 134	100	60 / 60	plus	ABC02907
Harvest35	U35_15188	1553	3e-25	1464 - 1523	100	60 / 60	plus

Contig Sequence (1553 bp)

>U35_15188 1553 Hv_44K_v2
GCGCCTCCATATATTCCAGCCACCGCCGCCACTCCCCGTCAAACCCACGCGAACGCGAGA
GAGAGGAGAGAGAGCTCAGAAAGCACCGCCCCCGCGAATCCGCGCCCGGATCTCTCGGCC
CGGCGGCGATGGCGCTCTCCGACCTCTCCCGCGACTCGCTCCTCCCCAGCTTCCTCTACT
CCTCCCCCGCCGCGCGCTCCTTCACCGCCCCGCGCTTCCCCTCCTCCCCGTCGCCCTACC
AGGCGCCCGCCGCGGCCCCGGCCGCCGGCATCGTCGGCGCCGGCGGGGCCGGGGGCGGCA
GGCCCTTCTCGATCCGCGCGCCCAACGAGAAAATCGTCATGTACTCGCCGGCCTTCTACG
CCGCCTGCACCGCCGGGGGGATCGCCAGCTGCGGCCTCACCCACATGGCCGTCACCCCGC
TCGACCTGGTCAAGTGCAACATGCAGATTGACCCGGCGAAATACAAGAGCATCACATCTG
GATTTGGTGTTCTGTTAAAGGAGCAAGGAGCTAGGGGATTCTTTAGGGGATGGGTGCCTA
CCTTGCTTGGTTACAGTGCTCAGGGGGCTTGCAAGTTTGGGTTCTACGAGTTCTTTAAGA
AGACCTACTCAGATATGGCTGGGCCTGAGAATGCCGTGAAGTACAAGACCCTAATTTACC
TTGCAGGGTCAGCTTCTGCCGAGGTAATTGCTGACATCGCTCTGTGCCCCTTTGAAGCTG
TCAAGGTCCGTGTGCAGACACAGCCTGGATTTGCCCGTGGCTTGAGTGATGGGCTTCCCA
AGTTCATCAAAGCCGAGGGTGCTGCTGGGCTTTACAAGGGCATCGTTCCGCTCTGGGGTC
GCCAGATTCCTTATACCATGATGAAGTTTGCGTCCTTCGAAACTATTGTTGAGCTTATCT
ACAAACACGCTGTTCCTGTTCCGAAGGCCGAGTGCAGCAAGTCTTCCCAGTTGGGTATCA
GCTTTGCTGGTGGCTACATTGCCGGTGTTTTCTGTGCTATTGTTTCTCATCCGGCTGACA
ACCTTGTCTCGTTCCTCAACAATGCCAAGGGTGCTACAGTGGGCGATGCTGTTAAGAAGA
TTGGCATGTTGGGCCTTTTCACCAGAGGGCTCCCCCTTCGTATCGTCATGATTGGTACTC
TTACTGGTGCTCAGTGGGGAATCTATGATGCGTTTAAAGTTATGGTGGGACTCCCGACCA
CCGGCGGTGCTCCACCAGTTGCTCCGGTAGAGGAATCAGCTTGATTGATTTTTGCTGCTA
TGACGATGTATTCCTGGTTGTGGTTATTGGTGGATGGGACTGTATCAGTTACTTGTTTAG
CACCCAAAATCTTTTGTTATTGTAGCAGATGGTTATTGTCTCTATCAGATGAGAGGAACT
CATTAAGCAGGCGAAATAGGCCTTTTTTTGCCCCCCGGGAAAGTTTGATGCTTGACATAA
TAAGTTTTAGGACAGCAAGGCTGTTAGAGCGCAGGTTCTGCCATCACCTGTACTGAGGGA
TTCCCATATAATCTTGTTTACCTCCAATAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15188 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g52860.1	369	protein\|phosphate carrier protein, mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi3g57890.1	367
Arabidopsis v10	AT5G14040.1	375	\| Symbols: PHT3;1 \| phosphate transporter 3;1 \| chr5:4531059-4532965 REVERSE LENGTH=375