barSeed - Barley Seed Development Database

Probe CUST_26121_PI390587928

Source Contig U35_12179

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26121_PI390587928	Hv_44K_v2	AAGACTGAAGTTCAGTAGCACTTAGTTGAACGGTAATATATCTTTATCCTGACGAGAAGT	652	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.094	1.389	1.453	1.022	0.372	0.435
Raw	99.842	213.557	183.713	206.437	25.820	32.920

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_48736.4	2787	2e-24	1286 - 1345	100	60 / 60	minus	ABC34591
MLOC	MLOC_48736.1	3979	2e-24	2530 - 2589	100	60 / 60	minus	ABC34591
Harvest35	U35_12179	715	3e-25	653 - 712	100	60 / 60	plus

Contig Sequence (715 bp)

>U35_12179 715 Hv_44K_v2
GTATCGAAGATGGCGAGGAGGAAGATGGAGAAGAGGGCAGTCGGAATTGCACACGAGTTT
CTGAGCTTGACCGTGGAGAAGATGGTGGAGGTGGAGAAGTTCAGCCAATTCCGGAAGTGG
TTTGGGATCGATGTTAATGTCAGGGACGTATTCTTGGATCACCCTGGGATATTTTACCTC
TCGGCCAAGGGAAAGCGGCATACAGTGTTCCTGCGGGAAGGATGATCGTGGCAAGCTTGT
TGAGCCTAATGATGTTTCTGAGGCCCGAAGAAAGCTTGTTGAGCTCATGCTCTTGCGTCG
CCATGGCCTTGGGAATGCTAATTCTAATGCCAACATGTCTTCAAGTGCCAGTGCCGATGC
CAAAGAGAGCGATGCCGATTTACAGGAACTAGAGCTCTAGTAGTGTGATGTATCTGTGAA
GCTGCATGACAGGACAACACGGAAGTTGTGCAATTCATTGATATCCTTGTTTAGTGTAAC
CTGTTAAGCAGGTGTTTGGCTCAACTTGGATGGCAAATATGTTAGTGGTGCAGATCCATA
TGATGATGACGATGGATGTCTCTTCAGGGATGGTAGTCGATTGGCATAACATGCTAGTCA
GTATACTCAAAACTCTAATTATGTTTCCCTGAGCTAGGCATGTTGGTAGGTCAAGACTGA
AGTTCAGTAGCACTTAGTTGAACGGTAATATATCTTTATCCTGACGAGAAGTTTT

Homology of Contig U35_12179 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None