barSeed - Barley Seed Development Database

Probe CUST_26118_PI390587928

Source Contig U35_24150

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26118_PI390587928	Hv_44K_v2	AAGAGAGTGATATTTGTGCACCCACCCATATTGCATCCTCGGTGCACCCACCATAAAAAA	652	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5718.1	2402	2e-24	1826 - 1885	100	60 / 60	plus	ABC14081 ABC15712 ABC21253
MLOC	MLOC_5718.2	1796	2e-24	1578 - 1637	100	60 / 60	plus	ABC14081 ABC15712 ABC21253
MLOC	AK250586.1	2177	3e-21	1559 - 1618	97	58 / 60	plus	ABC14081 ABC15712 ABC21253
JLOC1	JLOC1_3690.1	1894	8e-25	1586 - 1645	100	60 / 60	plus
Harvest21	ABC21253	738	3e-25	653 - 712	100	60 / 60	plus	ABC21253
Harvest35	U35_24150	738	3e-25	653 - 712	100	60 / 60	plus

Contig Sequence (738 bp)

>U35_24150 738 Hv_44K_v2
CGGCATCGGCTCCAATCTATGGAAGGAACGGACGGGCCTCTCCGGTGGCTCGACAATCAG
CCGCCGGGCTCCGTGGTGTACGTCAATTTCGGGAGCATCACGGTGATGTCCAACGAGCAT
TTGCTGGAATTCGCGTGGGGGCTGGCCAACAGCGGCTACACCTTCTTGTGGAACGTACGG
CCTGACCTTGTCAAGGGACACGACAACGCCGTACTTCCACCGGAGTTCTCGGCGGCGACA
GAAGACCGAAGCATGCTCTCGACATGGTGCCCGCAGGAGAAGGTGCTGGAGCACGAAGCC
ATAGGGGTGTTCCTCACGCATTCTGGGTGGAACTCATCGTTGGAAGGCATCTGCGGCGGT
GTGCCGATGGTGTGCTGGCCCTTCTTCACGGAGCAGCAGACCAACTGCCGGTACAAGTGC
ACGGAGTGGGGCATCGGGATGGAGATTGGGGAAGAGGTGACGAGGACCGAAGTCGAGGCC
ATTCTACGGGAGGCCATGGAGGGGGGGAAGGGCCAAGAGATGCGACGGCGCGTGCTGAAG
CTCCAGGAGAACGCCGTTGCCTCGGCGCGGCATGACGGAAGGTCCATGCGTAATGTTGAT
AGGCTCATCCAAGAAGTGTTGCTGGCTTGATACAAGCAAACTGGTAAATAATAAGAGAGT
GATATTTGTGCACCCACCCATATTGCATCCTCGGTGCACCCACCATAAAAAAACTTAGTT
AAATTTTTTTTTAAAAAT

Homology of Contig U35_24150 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g31200.1	498	2e-104	protein\|cytokinin-O-glucosyltransferase 2, putative, expressed
Brachypodium v1_2	Bradi5g11230.1	490	2e-113
Arabidopsis v10	AT1G22360.1	481	6e-74	\| Symbols: AtUGT85A2, UGT85A2 \| UDP-glucosyl transferase 85A2 \| chr1:7895068-7897527 REVERSE LENGTH=481