barSeed - Barley Seed Development Database

Probe CUST_26109_PI390587928

Source Contig U35_24158

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26109_PI390587928	Hv_44K_v2	AAAGCAAGCAAGCAGCGTGCATGCAGATGCAGTGCAGCTAGCAGAAGCGCCTAAAGCCAC	74	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53111.2	1824	2e-24	1516 - 1575	100	60 / 60	minus	ABC10748
MLOC	MLOC_53111.1	2540	2e-24	1806 - 1865	100	60 / 60	minus	ABC06990 ABC10748
MLOC	MLOC_53110.3	3401	2e-24	3093 - 3152	100	60 / 60	minus	ABC06990 ABC10748
JLOC1	JLOC1_34089.1	2207	8e-25	353 - 412	100	60 / 60	plus
JLOC1	JLOC1_34088.1	3403	8e-25	3099 - 3158	100	60 / 60	minus
Harvest21	ABC18629	542	3e-25	75 - 134	100	60 / 60	plus
Harvest35	U35_24158	544	3e-25	75 - 134	100	60 / 60	plus

Contig Sequence (544 bp)

>U35_24158 544 Hv_44K_v2
GCCTCCTCCTCCTCCGAATTCAGCAACCTCCGCACCGCACCACCCCGCCATACCCTGCGG
AGCCACCCATCTCAAAAGCAAGCAAGCAGCGTGCATGCAGATGCAGTGCAGCTAGCAGAA
GCGCCTAAAGCCACCGCCGCCACATGCCCAGGCCGGTACGCGCGCACCATTTATCTTCCC
CTTCCCCCAGCCATTGCCGAGCTCGGGACGCTACGAGATCGCGGCGTCGACAAGGGTGAC
CAGGAGGAAGGGAATGTCTGAACCGGCCACGCAATGCAGGGGAAATGGGGGCGGCGGCGA
GGGCGGCGCCGGCGGCATGAGAACGGTGGAGTGCCTCAGAGGGAGGCTGCTCGCCGAGCG
GGTGGCGTCCAAGGCGGCCAAGGAGGAGGCCGACCAGCTCGCCGCCAGGTTGGACGAGCT
TGAGAAGCAGCTCTCCGACGAGGTCAAGATCAGGGACAAGGCGGAGCGGAGGCTGAGGAG
GGTCATCAAGAGGCTCGAGTCCCTCAAGATTCTGGATGTGGGGAGCTCCATCGGCTCGCT
CTCC

Homology of Contig U35_24158 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None