barSeed - Barley Seed Development Database

Probe CUST_26108_PI390587928

Source Contig U35_24159

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26108_PI390587928	Hv_44K_v2	AGGGTCAGCTGCTGTACATGTAGTTTCCAATCTTTTAAGAGTTCCCTTTTGTTCAAAAAA	938	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367701	1977	9e-22	1914 - 1968	100	55 / 55	plus	None
MLOC	MLOC_60545.1	5240	9e-22	1485 - 1539	100	55 / 55	minus	None
MLOC	MLOC_60545.4	3634	9e-22	4 - 58	100	55 / 55	minus	None
MLOC	MLOC_60545.3	3123	9e-22	25 - 79	100	55 / 55	minus	None
MLOC	MLOC_60545.2	4468	9e-22	1485 - 1539	100	55 / 55	minus	None
JLOC1	JLOC1_39488.3	5388	5e-22	3820 - 3874	100	55 / 55	plus
JLOC1	JLOC1_39488.2	4555	5e-22	2987 - 3041	100	55 / 55	plus
JLOC1	JLOC1_39488.1	3871	5e-22	2303 - 2357	100	55 / 55	plus
Harvest35	U35_24159	1009	3e-25	939 - 998	100	60 / 60	plus

Contig Sequence (1009 bp)

>U35_24159 1009 Hv_44K_v2
GGTTGTCTCCTAGTGCAGTGAATTGTGGCTCAGCAAATGACACCGGATATGAGTTTCCAC
CTCCTAATCCACTTGACACTTCAGGAGGCCCAGATGAAACTTCATTTTTCCTTAATGAAA
GCTTTGATGATCTGGGGTTGTCATTTTGGGAGTATCCTTCGACTACCCAAGATGATCCAG
GAATACAAGGAACAGATAATCTGGGTGAAGTGCAAAACTACCCTGGCACCAATCTATCAT
TGCACGAGCCAGTTTCTACGGCTAATTTGGATGTATTAGCACCAGCTCCAAACCAACTGG
GCTATGGGCATGATGGAAGTTTAAATAATGTCAAAAATACTTCTCGGAAAAGGAAGAACC
CTGTGGATGAAATAACATCTTTAGATGCATCAGTTCCCATGAGTGGCAATGACGATGACG
ACGATTTTGTTGGGGATGGATCTGGTGGCACTTCCTCACTGTCTGGGCAGGCACGGTCAG
TTCGAACAAAATCAGTACTAGCTATTGAGTCAGATTCTGATTAGCGTCCATAGTTGGGTG
CCCCCGTACTATTGGTTGGTCGGGCGGGGAGGTGTGAGATGTATACTGTCCGCTTGGTGG
AATGCTTGCTCAGGTTTTGTTTGCGGTCCAGGAGTGACTGTCCCCCCATGTCTGTCTGTC
TTTCCAAGGACGAGAATGGACGCAGTGGTATCTATATCTATTTACTTCCTCCGTCCCTAA
ATAATTGTAGTTAGAGAGAATAGTTTAGTTCTTTCCAACTACAATTATTTAGGTACAGAG
GGAGTATGTAGGAAGCAGTTCTTTTTTCTTTTTCTACCATTCTCCTTTTATGTTTCATGG
TGATCACTTTGGAGGCAGTAGAATTTAGGGAAGGGCGCAAAGCTCCTCCATGGTACCTGC
CTGTAGGCAAAAGTCTGTAGCATAGCTAGCAGGAACTGAGGGTCAGCTGCTGTACATGTA
GTTTCCAATCTTTTAAGAGTTCCCTTTTGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_24159 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None