barSeed - Barley Seed Development Database

Probe CUST_26105_PI390587928

Source Contig U35_50424

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26105_PI390587928	Hv_44K_v2	GATTACTTGGAACCATTATCACTTGCGTTGGAGGTTGAGAAATGGTCACTGGTTCAGCCA	394	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.265	1.200	1.370	0.783	0.429	0.507
Raw	135.542	190.264	197.461	157.074	33.587	43.544

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36535.2	807	2e-23	361 - 418	100	58 / 58	minus	None
MLOC	MLOC_36535.3	451	2e-23	319 - 376	100	58 / 58	minus	None
MLOC	MLOC_36535.1	711	2e-23	362 - 419	100	58 / 58	minus	None
JLOC1	JLOC1_23533.2	623	1e-23	205 - 262	100	58 / 58	plus
JLOC1	JLOC1_23533.1	580	1e-23	183 - 240	100	58 / 58	plus
Harvest21	ABC52546	669	3e-25	395 - 454	100	60 / 60	plus
Harvest35	U35_50424	669	3e-25	395 - 454	100	60 / 60	plus

Contig Sequence (669 bp)

>U35_50424 669 Hv_44K_v2
ATGCCCTTGCTCCCCGATCCCAAGTCGTCCAGTTCGCTGCACCTTCCGTCCCCGTGATGC
CCTCGCCGTGACCTCACCGGCGGCCGTTATGACCTCGCCGGCTTCCACCTCTTCCTGGTT
CTCCGGAATCGTGGGCACAGCATCCGGCAATCCCCTTTCTTCAGCCATGCCTCCCGCCGG
CGGCGTCACCTCTGCCCCCGTCTCCCTTCCCGACACCCCTGCTGCCGTCACCTCTGCCCC
TGTAGCCACCACAGGCGTATGCGCGCGCAGGAAGCAGCTCCAGGGCACGCTGTTCAAGTA
CGGGCCCAAGTCCGCTCAGGTTGCGTTTAGGACTGGTGATTTTACCCGCCAGCTGATTTT
CATTGGTGGTTTGACAGATGGGCTCTTAGCAACTGATTACTTGGAACCATTATCACTTGC
GTTGGAGGTTGAGAAATGGTCACTGGTTCAGCCATTACTTTCTTCATCATACATTGGATA
CGGAATTTCCAGCTTGGAGCAAGATGCATTGGAACTTGATCAGCTCATCGGCTACTTGAT
AAATAAAGAAAATTCTGAAGGAGTAATACTGCTCGGTCACAGCACTGGTTGCCAGGATAT
TATACATTACATGCGGACAAACTTTGCATGTTCCAAAGCAGTTTCTGGAGTAATTTTGCA
GGCCCCAGT

Homology of Contig U35_50424 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g11060.1	357	6e-73	protein\|expressed protein
Brachypodium v1_2	Bradi1g54050.1	352	8e-93
Arabidopsis v10	AT5G19050.1	361	9e-60	alpha/beta-Hydrolases superfamily protein \| chr5:6369307-6371726 FORWARD LENGTH=361