barSeed - Barley Seed Development Database

Probe CUST_26101_PI390587928

Source Contig U35_50427

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26101_PI390587928	Hv_44K_v2	CTCGTCCACAAATGGGAGCCCGGCGTCCCTTCCTTCGACGCCCGCCACCGCCGCTCCGAC	265	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56652.3	1392	2e-24	1049 - 1108	100	60 / 60	minus	None
MLOC	MLOC_56652.2	1534	2e-24	1199 - 1258	100	60 / 60	minus	None
MLOC	MLOC_56652.1	1820	2e-24	1488 - 1547	100	60 / 60	minus	None
Harvest21	ABC52548	485	3e-25	266 - 325	100	60 / 60	plus
Harvest35	U35_50427	485	3e-25	266 - 325	100	60 / 60	plus

Contig Sequence (485 bp)

>U35_50427 485 Hv_44K_v2
CCTCCCCGACTACTCGCTAGGTCTCCCTCGAGCGATGGCACAGCCGTCGCCGCCTCCGCC
GCCGGCGAGACGTCCCACCACCATACATGATCTCGACGACGACCTCCTCCGCGAGGTCTT
CCTCCACCTCCCGGCCCTCCCAACCCTCGTCCGCGCCGCCCTCGCGTGCCGCTCCTTCCT
TGGCGCCGTCCGCTCGTCCCCCGCCTTCCGCCGCCGCTTCCGGGATCTCCACCCGTCTCC
CTTCGTCGGCCTCTTCATCCAGCCCCTCGTCCACAAATGGGAGCCCGGCGTCCCTTCCTT
CGACGCCCGCCACCGCCGCTCCGACCGGGACTTCGCCGCCGCCGTCCGCGGCGGCGATTT
CGGGCTCAACGGCCTCCCGGACCCAGACGACGACCATGAAGACTGCTGCGTCGACCAAGA
CGAAGACGAGGAGGACAACGACGAGGAGGACAACGACGACGAAGAAGAGGAGGAGGAGGA
GGATC

Homology of Contig U35_50427 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None