barSeed - Barley Seed Development Database

Probe CUST_260_PI390587928

Source Contig U35_32047

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_260_PI390587928	Hv_44K_v2	AATGGCGTGTCACTTCCTCTTGGCCGTCCTCCTGGCGTCGTCTTCTTGGGTTGCTGCGTC	182	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60000.1	4304	2e-24	3885 - 3944	100	60 / 60	minus	ABC07752
MLOC	MLOC_60000.2	4232	2e-24	3813 - 3872	100	60 / 60	minus	ABC07752
JLOC1	JLOC1_39097.3	874	8e-25	255 - 314	100	60 / 60	plus
JLOC1	JLOC1_39097.2	1652	8e-25	257 - 316	100	60 / 60	plus
JLOC1	JLOC1_39097.1	1526	8e-25	203 - 262	100	60 / 60	plus
Harvest35	U35_32047	425	3e-25	183 - 242	100	60 / 60	plus

Contig Sequence (425 bp)

>U35_32047 425 Hv_44K_v2
TCGAGCACTGTTGGCCTGCTGGCCATCGCCGGCCTAGTCGCGCGCGAGAGAGAGAGTCAG
AGAGACGAGGCGAGAGAAGAAGCAGTGAGTGAGCTGCAGCCAGCCAGCCAGCACGATATA
GTAGAGCGGAGCGGAGCGGAGCGGAGGGGGGTGAAGGAAGGAACAGCAGAGGAGAGAGCT
CCAATGGCGTGTCACTTCCTCTTGGCCGTCCTCCTGGCGTCGTCTTCTTGGGTTGCTGCG
TCCTCCGGCGCCGCCGCGGACGATGTCATGGTGCCCCGCCCGACGACGGCGGCGGCGCTC
ACCTTCCGGGAGGGCTACACCCAGCTGTTCGGGGACTCCAACCTGAGGCTCCACGGCGAC
GGCAAGCGAGTCCACATCTCCCTCGACGAGAGGACAGGCTCCGGGTTCGCGTCGCAGGGC
GCGTA

Homology of Contig U35_32047 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None