- Probe CUST_26095_PI390587928
- Source Contig U35_48110
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26095_PI390587928 | Hv_44K_v2 | CCGGGATATGATTATACTCTCAGCGCATTTTAATTTAGTCAGCTAGTAGAAACACTTAAA | 14 | GeneList: royalblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.079 | 4.239 | 1.183 | 0.808 | 0.336 | 0.372 |
| Raw | 130.952 | 227.619 | 51.325 | 60.405 | 7.806 | 9.545 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK358490 | 3130 | 3e-22 | 1679 - 1737 | 98 | 58 / 59 | plus | ABC13844 ABC17852 ABC41122 ABC44969 |
| MLOC | MLOC_19966.1 | 954 | 3e-22 | 114 - 172 | 98 | 58 / 59 | minus | None |
| MLOC | AK369246 | 1396 | 3e-21 | 1340 - 1396 | 98 | 56 / 57 | plus | None |
| JLOC1 | JLOC1_13840.1 | 2831 | 1e-22 | 1985 - 2043 | 98 | 58 / 59 | minus | |
| Harvest35 | U35_48110 | 407 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus |
Contig Sequence (407 bp)
>U35_48110 407 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAGTGTTTCTACTAGCTGACTAAATTAAAATGCGCTGAGAGTA TAATCATATCCCGGCCTCTAATTATGCTTATTTACAATCTTCTGTGTGTCCTAATGAAGT TGGTTGTGATCAAAGAAACCACGGAGCCACACGCATACAACGCCGCGGCGAGCACGGGGG CGGCGCCCAACAAGACGGCCTTCCATTGCCTCGTCGCCGCCAAGACGGCCGCAGCGGCAG CCACGGCGGCGAGCACGACGAAGGCCTTCTTCAGGGCGGTGTATCTGTTGACGGTGTCCC TGCACCCCTTGCAGTGCACGACGTGCCGGAAGTATCTATTGGTGGGGTTGGGCGCGTGCT GCGTGCCGGCGCCGCCCTTGGCCGGGAACGACGCGGAGATGCCCGCG
Homology of Contig U35_48110 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |