barSeed - Barley Seed Development Database

Probe CUST_26090_PI390587928

Source Contig U35_12185

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26090_PI390587928	Hv_44K_v2	CTTCAAACTTTGAGTGTACATCTCTGAACCTGGCTGTGTATTAATGAAGCAAAATGAAAA	212	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.449	1.528	1.277	0.878	0.492	0.514
Raw	21.326	34.380	25.777	27.378	4.473	5.443

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_18798.2	1245	6e-21	1127 - 1185	97	57 / 59	plus
JLOC1	JLOC1_18798.1	981	6e-21	863 - 921	97	57 / 59	plus
Harvest35	U35_12185	285	3e-25	213 - 272	100	60 / 60	plus

Contig Sequence (285 bp)

>U35_12185 285 Hv_44K_v2
CTTGGCTGGTAGGAGAGAGAGAGAAAAATATTTTTTAATGAACCCCATGAGAACTAGCTC
CAATTAGCACCTCTTGGGTGGACTAGTTTTTTTAGGTGGGTTAGATGCAACTAGTTCCAA
TCTAACCCTTGTGTTTGGATACTTTAGGGCTAGTTGAACCCAAACTAGCTCGAACTAACT
CTAGCCCATGGATCCAAACAGGGCCATAGGTTCTTCAAACTTTGAGTGTACATCTCTGAA
CCTGGCTGTGTATTAATGAAGCAAAATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_12185 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None