barSeed - Barley Seed Development Database

Probe CUST_26080_PI390587928

Source Contig U35_48119

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26080_PI390587928	Hv_44K_v2	AGGGTAGCATGGTTTTGTGATACGGGTCACCCTCGAGAGTGGCAATACGTTTTCAAAAAA	11	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14328.2	2967	3e-22	441 - 496	100	56 / 56	minus	ABC18155
MLOC	MLOC_14328.1	4700	3e-22	3046 - 3101	100	56 / 56	minus	ABC18155
JLOC1	JLOC1_9782.3	2700	1e-22	2622 - 2677	100	56 / 56	plus
JLOC1	JLOC1_9782.2	2100	1e-22	2022 - 2077	100	56 / 56	plus
JLOC1	JLOC1_9782.1	2102	1e-22	2024 - 2079	100	56 / 56	plus
JLOC1	JLOC1_9781.3	3892	1e-22	2660 - 2715	100	56 / 56	minus
JLOC1	JLOC1_9781.2	5575	1e-22	4343 - 4398	100	56 / 56	minus
JLOC1	JLOC1_9781.1	3956	1e-22	2724 - 2779	100	56 / 56	minus
Harvest35	U35_48119	330	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (330 bp)

>U35_48119 330 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAAAACGTATTGCCACTCTCGAGGGTGACCCGTATCACAAAAC
CATGCTACCCTTGGTGCTTATTTGCAGGAAGATCTCGTTTGGAAGAAGAAAAAAAGTTTT
ATGTACAGAAACAGAATTGACGTTCCTATCAAGGAATGGTCGTCCACCTTTCAGAAAAAG
AAGAATGCATGGTCGTACAGGAAGACTGAACCCACCAGCTATGCACACATGGCTACATGC
CAAACCAATCTCATAATCGTTTTCAGGCCGTGTAATCTCCTTCGTATGCTCCCGACAGGA
AAATGGAGCCCAACCCATGGCCGGCGAGCA

Homology of Contig U35_48119 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None