- Probe CUST_2607_PI390587928
- Source Contig U35_27098
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_2607_PI390587928 | Hv_44K_v2 | CTTGCCATGTATAAATCCTTGATGTCATGCATAAGGAGTTGTCATTTCATGTGACTTAAA | 423 | GeneList: black MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.061 | 0.134 | 0.567 | 1.784 | 2.386 | 2.289 |
Raw | 3.237 | 16.672 | 66.317 | 282.838 | 150.113 | 161.771 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK373694 | 680 | 2e-23 | 601 - 658 | 100 | 58 / 58 | plus | ABC35271 |
Harvest21 | ABC35271 | 496 | 3e-25 | 423 - 482 | 100 | 60 / 60 | plus | ABC35271 |
Harvest35 | U35_27098 | 497 | 3e-25 | 424 - 483 | 100 | 60 / 60 | plus |
Contig Sequence (497 bp)
>U35_27098 497 Hv_44K_v2 GGGTCAGTTTGACGGATTGGCACCTTCTTATACAACACTGACGAGCTCCGTCGCACGCGT TCTCTAGAGAGGACCATTCCGACATCGTCCGTCCATCTTAGCCATCACTTCAGTTACGTG CGTGACCGTCATGATGAGCTGGACCCATTCCCCCTCTCTCGGGTGATCGCCGTGGCCTCC TCGCTGAAGAACCACCGACAACATAGTCACCACACTCTGTTCCCCCCTCTCTCTTTAATC CTGATAGTGGGACCCCATTGTCAACCTCTCTCACTCGCGCCTAAAGTGGTATGAGTGGAG TCACCCGGAGAAAATAAGCCATCGACGTGGCCGCCCTTGGATTTTCTATTTTTTGTTTAA ATTCAAATAATTTGATAAGACTCTGATGTAATGTCCCAAGTGTTACATTGTCATATTTGG AACCTTGCCATGTATAAATCCTTGATGTCATGCATAAGGAGTTGTCATTTCATGTGACTT AAAAAAAAAAAAAAAAA
Homology of Contig U35_27098 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |