barSeed - Barley Seed Development Database

Probe CUST_2605_PI390587928

Source Contig U35_39070

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2605_PI390587928	Hv_44K_v2	GTAGAAAGTACTGTATCCTACAGTACTATATCTTGCAAGCTGGTGCTACTACCCAGTAGG	17	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57500.1	1520	7e-23	21 - 80	98	59 / 60	plus	ABC13982 ABC19199
MLOC	MLOC_57500.2	1710	7e-23	2 - 61	98	59 / 60	plus	ABC13982 ABC19199
Harvest35	U35_39070	390	3e-25	18 - 77	100	60 / 60	plus
Harvest35	U35_42182	628	4e-24	2 - 59	100	58 / 58	plus

Contig Sequence (390 bp)

>U35_39070 390 Hv_44K_v2
CCACGCGTTCCGGAAGTGTAGAAAGTACTGTATCCTACAGTACTATATCTTGCAAGCTGG
TGCTACTACCCAGTAGGTCGCATCCATGGCTGCTCCTCACCCTCACGTGATGGTGCTTCC
GTTCCCAGCGCAGGGCCATGTCATGCCCCTCATGGAGCTCTCCCACCGGCTCGTCGGCCA
CGGCCTCGAGGTGGACTTCGTGAACACGGACTACAACCACGACCGCGTCCTCAAGGCCAT
GCAGGGTGCCGAGAGAGGAGCTGCTGGCCCCGACGGCGTCAACATGGTCTCTATCCCGGA
CGGAATGGGCCCCGACGGCGACCGCACCGACGTCGCCACGCTGGGCAGCGGCTTGCCGGC
GGCCATGCTCGGCCCTCTCGAGGAGATGGT

Homology of Contig U35_39070 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None