barSeed - Barley Seed Development Database

Probe CUST_26039_PI390587928

Source Contig U35_24174

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26039_PI390587928	Hv_44K_v2	TGCAGAAGATGTTCATGAAGGGCTTCTCCGGTGACCTGGAAGGCGCGCACGCCAAGGCGA	400	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5438.2	4727	2e-24	3090 - 3149	100	60 / 60	plus	ABC18416
MLOC	MLOC_5438.1	4637	2e-24	3002 - 3061	100	60 / 60	plus	ABC18416
JLOC1	JLOC1_3500.1	4623	8e-25	2988 - 3047	100	60 / 60	plus
Harvest35	U35_24174	463	3e-25	401 - 460	100	60 / 60	plus

Contig Sequence (463 bp)

>U35_24174 463 Hv_44K_v2
TACACGCCGGACCCGAGGCACATGGACCGGGAGATCGCCAAGTACTGCTACCTCCTCATC
GGCATGTCCTCCGCGGCGCTGCTCTTCAACACCGTGCAGCACCTCTTCTGGGACACGGTC
GGCGAGAACCTGACCAAACGCGTGCGCGAGAAGATGCTCACGGCGGTGCTCCGCAACGAG
ATGGCCTGGTTCGACATGGAGGCCAACGCCAGCGCGCACATAGCCGCCAGGCTCGCGCTG
GACGCCCAGAACGTGCGCTCCGCCATCGGGGACCGCATCTCCGTCATCGTGCAGAACTCG
GCGCTTATGCTCGTCGCATGCACCGCCGGGTTCGTCCTGCAGTGGCGCCTCGCGCTCGTG
CTCCTCGCCGTCTTCCCGCTCGTCGTTGGCGCCACCGTGCTGCAGAAGATGTTCATGAAG
GGCTTCTCCGGTGACCTGGAAGGCGCGCACGCCAAGGCGACGC

Homology of Contig U35_24174 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g45030.1	1345	1e-74	protein\|multidrug resistance protein, putative, expressed
Brachypodium v1_2	Bradi3g12627.1	1377	3e-77
Arabidopsis v10	AT2G36910.1	1286	2e-68	\| Symbols: ATPGP1, PGP1, ABCB1 \| ATP binding cassette subfamily B1 \| chr2:15502162-15507050 FORWARD LENGTH=1286