barSeed - Barley Seed Development Database

Probe CUST_26038_PI390587928

Source Contig U35_24175

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26038_PI390587928	Hv_44K_v2	GAAAAGCAAAAGAGACATCTTATGATGCACTGAACAATACCCCCTGTCTGCTTCCGACCT	703	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355736	4340	2e-24	2348 - 2407	100	60 / 60	plus	ABC11675 ABC11676
MLOC	MLOC_5047.1	3554	2e-24	1786 - 1845	100	60 / 60	plus	ABC11675 ABC11676
MLOC	MLOC_5047.4	3773	2e-24	1815 - 1874	100	60 / 60	plus	ABC11675 ABC11676
MLOC	MLOC_5047.3	3714	2e-24	1752 - 1811	100	60 / 60	plus	ABC11675 ABC11676
MLOC	MLOC_5047.2	3766	2e-24	1785 - 1844	100	60 / 60	plus	ABC11675 ABC11676
JLOC1	JLOC1_3215.2	3757	8e-25	1758 - 1817	100	60 / 60	plus
JLOC1	JLOC1_3215.1	3785	8e-25	1786 - 1845	100	60 / 60	plus
Harvest21	ABC18907	780	3e-25	704 - 763	100	60 / 60	plus
Harvest35	U35_24175	780	3e-25	704 - 763	100	60 / 60	plus

Contig Sequence (780 bp)

>U35_24175 780 Hv_44K_v2
CATGAACGGGGCATGAATGAAGATTTTCTCCTTATTGTCCTAAAGGACCTTCTTCCACGC
CGACCGGAGCTAAGGCTTGTATTGATGAGTGCAACCCTCAATGCTGAGATGTTCTCTTCA
TACTTTGGTGGAGCACCCATGATACATATACCTGGTTTTACATACCCTGTCCGGAGTCGT
TTCCTGGAAGATATTCTTGAAATTACTGGCCACAGATTGACTCCATACAATCAGATCGAT
GACTATGGCCAAGAGAAAAGTTGGAAGATGCAAAAGCAAGCTCTACGGAAGAGAAAGAGC
CAAATTGCTTCTGTTGTGGAAGATGCGGTTAAAGCTGCGGATCTAAGGGATTATAGTCCG
CAAACTCGTGACTCTCTATCCTGCTGGAATCCTGATTCAATTGGTTTTAACTTGATAGAA
AATGTCTTGTGCCATATTTGTCAAAAGGAAAGAGATGGTGCTGTGCTTGTATTTATGACT
GGGTGGGATGACATTAATACGCTGAAAGATCAGCTACAATCCAACCCATTGCTTGGCGAC
CCTAGTAAAGTTTTGCTGCTTGCATGTCATGGTTCAATGGCTAGCTCAGAGCAGAAACTA
ATCTTTGACAAACCTGAGCCTGGTGTAAGGAAAATAGTTCTTGCCACTAATTTGGCTGAA
ACTAGTATTACTATCAATGACGTAGTTTTTGTTGTTGATTGTGGAAAAGCAAAAGAGACA
TCTTATGATGCACTGAACAATACCCCCTGTCTGCTTCCGACCTGGATCTCCAAGGCTTCT

Homology of Contig U35_24175 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g02884.1	813	2e-162	protein\|ATP-dependent RNA helicase DHX36, putative, expressed
Brachypodium v1_2	Bradi1g08607.1	1151	8e-126
Arabidopsis v10	AT1G48650.2	1206	1e-132	DEA(D/H)-box RNA helicase family protein \| chr1:17989517-17995169 REVERSE LENGTH=1206