barSeed - Barley Seed Development Database

Probe CUST_26037_PI390587928

Source Contig U35_24176

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26037_PI390587928	Hv_44K_v2	TTACGCACACTACATGGCAGTGGTCCAAAGGTTTGGTTAAACATGGGATGTATACCACGA	1015	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.168	1.127	1.353	1.089	0.587	0.551
Raw	119.080	173.474	188.860	235.980	45.141	46.799

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_4628.1	930	6e-21	32 - 89	97	58 / 60	plus
Harvest21	ABC20944	785	3e-25	722 - 781	100	60 / 60	plus
Harvest35	U35_24176	1079	3e-25	1016 - 1075	100	60 / 60	plus

Contig Sequence (1079 bp)

>U35_24176 1079 Hv_44K_v2
CCCCGACCAATTGTCAGCATGACGCAATGGAGGCCGCTGGCGTCGACATAGCGGAGTTTT
GCCCGCCGACCAAGTGCCCGTGACGCGGAACGCTCGGGGGCATTCATTACATATACCACG
GTACCGGTTGACGATAGGAAGGGTTGCCGCGTGGAAGTGATCCTTCATACTTAACATGAC
GCTTTTTCACGAGGTTTTGCTTTAGATTGGGTTTCAGGTATGCAGCTGCCAATGAAGTGA
AGAAAGCAGTCAAGACCTTTGATGTGATCCAGAGGTTTAAAGTGGAAGCGGACCAAACTG
TATTTTATTCCCTTCTTCGTGCTCTTTGCAGAAGTAAAAACATAGAAGATGCTGAGGAGT
TGCTTCTTGCAAGAAGGAAATTTTTCCCACTCACAGCAGAAGGTTTCAATATAATACTTG
ATGGTTGGTGTAATATATTCACCGATGTGGCCGAAGTAAAGAGAATTTGGAGAGAAATGT
CAAATTGCTGCATTACTCCTGATGGTACATCTTATGCTCTCATGGTCTGTTGTTTCTCTA
AGGTAGGGAACCTTTTTGATACTCTGAGGGTTTATGATGAGATGAAGAAGAGGGGTTGGA
GTCCTGGTATTGATGTCTATAACCAACTTATTTATGTTCTGACAAGAGAGAATTGCGTGA
AGGATGCAAAAAATGTTCTCAGTAAAATGGTAGATGAAGGTTTCCAACCGGATGTTGAAA
CATACAACAGTATTATAGTTCCACTTTGTGAAAGTTGCAAGCTTGACGAAGCGCGGAAGA
TAATGGAAGATATGAAAATGAAGGGCATTGTTCCAACCATTTCGACGTACCATGCATTTT
TGAAACAGGAAGGCATTGACGAAACACTGCAGCTACTGAAGAAAATGAAAGAAGATGGCT
GTGGCCCTAACGGTGACACATTTCTCATGCTCATTGATAAGTTTATCCAACTGAATGAGT
CTGGAAATGCTCTGAGGGTGTGGACTGAAATGCGAAGATACGACATTAGTCCTGGTTACG
CACACTACATGGCAGTGGTCCAAAGGTTTGGTTAAACATGGGATGTATACCACGAGCTT

Homology of Contig U35_24176 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g17080.1	529	2e-158	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g19530.3	524	1e-164
Arabidopsis v10	AT1G80880.1	540	4e-99	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr1:30395194-30396921 REVERSE LENGTH=540