barSeed - Barley Seed Development Database

Probe CUST_26036_PI390587928

Source Contig U35_24177

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26036_PI390587928	Hv_44K_v2	TGTAAACAGTAATGAAGGATTGCGATATATATTAGTGAGGACAACCGCCAGGACCGGTTC	575	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7128.2	5204	2e-24	4719 - 4778	100	60 / 60	plus	ABC18806
MLOC	MLOC_7128.3	4320	2e-24	3835 - 3894	100	60 / 60	plus	ABC18806
MLOC	MLOC_7128.1	5306	2e-24	4816 - 4875	100	60 / 60	plus	ABC18806
JLOC1	JLOC1_4701.2	5394	8e-25	4499 - 4558	100	60 / 60	plus
JLOC1	JLOC1_4701.1	4611	8e-25	3716 - 3775	100	60 / 60	plus
Harvest21	ABC18806	681	3e-25	576 - 635	100	60 / 60	plus	ABC18806
Harvest35	U35_24177	681	3e-25	576 - 635	100	60 / 60	plus

Contig Sequence (681 bp)

>U35_24177 681 Hv_44K_v2
AATTTAAGGCTTGTTTCTCAAAACATTCGCAGTTGCCGCCTAAGAGCTTTCGCCCTGCCA
GGCTAGAGAGCTAATGCTGCTAATTCCTTCCTTGGATGTCTGAGCCTCGTTCACATCTCC
TCCCCATTTCATATTTATATCAATTTTAGTTTATTGTTTTTGCTGCTTGTTTAATTGCAT
TGGCTTGTTTTTCAAACATTTTGCTTTCTCTGGTTTTTGCTCTGCCATGTTTCATTCTCT
CAAGCTGAATTTATATGCTAATTATTGATGGGAAGGCGATAATGGAAGGGTTGAAGGCTT
GGAAGTCCCCTTGACAAAGTTTTACAAACCAACCGGCCTCTATGGAGTCGTTGATGACCA
TCCGTCTGCGGCTTTGGTTGCATGTGGGGTGTAGTTATAATCTACTGTGTATGAGGTCCC
TTATATTTTTGGGTGTATGAAGTCTGCTTAATCATCCAACCTACCATATTGTAATTAGGG
AATCTACTTTTCCCAACGTCTGGCGGCTCTGTCCACAACCCGCTCGTCGTGGAACCTGTG
CCGCGTCTGTAGAGTGTCAGGCGATATATATTCTCTGTAAACAGTAATGAAGGATTGCGA
TATATATTAGTGAGGACAACCGCCAGGACCGGTTCCTGGCCCGTTGTCGTCGCTGGACAG
GCTAGAAAAAAAAAAAAAAAA

Homology of Contig U35_24177 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None