barSeed - Barley Seed Development Database

Probe CUST_26024_PI390587928

Source Contig U35_48130

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26024_PI390587928	Hv_44K_v2	CTTGTGGCCTGATTTCTGGGGGCAATCAGAAATGCGATGTACTGATATTTTGCTAAAAAA	11	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.067	1.137	1.191	1.012	0.434	0.329
Raw	1200.003	1963.720	1859.050	2475.281	374.806	306.481

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367003	1801	3e-21	1745 - 1798	100	54 / 54	plus	None
MLOC	MLOC_53689.1	1371	3e-21	1213 - 1266	100	54 / 54	plus	None
JLOC1	JLOC1_34503.1	956	2e-21	829 - 882	100	54 / 54	plus
Harvest35	U35_48130	436	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (436 bp)

>U35_48130 436 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGCAAAATATCAGTACATCGCATTTCTGATTGCCCCCAGAAAT
CAGGCCACAAGTTTAACACAAAGTTTGGAATGTAAGTAGGATCACCGAAGTTTCCGATAC
AATGCGTGCTTCATACTCCGCCTAAACTTTACGCCGTCAAGCTTGCCGTTCCAGTGGCAC
ATTACGCCGCTCCAGTGGCACTAAACTTTGCCGTTCTCCGCGAGACCGCAACTACTGAAA
AAGGGTCCTCGCATGAAAAATCAGTTCCTTTCTGAAAACTCCACGGTCTTCCTCCTTCAG
GACCTCCACTCACAAGCACCACCACATGGCCGGGGGATATACTGAGCTCACTCTTCACCT
TGGAAAGTGCGTCATCTGGTGAAAACGGCGTCAAGCTTGGATTTGCCATCATAATAGCCG
CCTTCTCCAGCCCATA

Homology of Contig U35_48130 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None