barSeed - Barley Seed Development Database

Probe CUST_2601_PI390587928

Source Contig U35_39078

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2601_PI390587928	Hv_44K_v2	CTGCTTTGCGATTTGTGAGTTTGGCGTATGCATCACATGGAATGAGTACACCTGATGTTT	573	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.258	1.893	1.283	0.990	0.406	2.884
Raw	8.335	111.999	58.781	77.912	10.148	79.161

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70584.1	856	3e-22	788 - 846	98	58 / 59	plus	None
JLOC1	JLOC1_46850.1	877	1e-22	678 - 736	98	58 / 59	plus
Harvest35	U35_39078	633	3e-25	574 - 633	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_39078 633 Hv_44K_v2
GCAAGAGAGAGTGCAGTAGCTGGTCTCTCTGCCGACAAACTTGTACGCGCGGCAACGATG
GCGGCTGGGGGAAGAGGCAGTGCTGGCAGTAAGGCGCTTGTCGCCGGCGCCGCGTTCCTG
TGCGTGGCCGCGGTGCTCCTGGCGGCCACCCCCGCCGCCGAGGCGGGGGCGACGACGTAC
CTTGTTGGCGACGCCGCCGGATGGACGCGCAACGTGGACTACGGAGGGTGGCTGGCCGGC
AAGACCTTCCGCGCCGGCGACGTGCTCGTGTTCAAGTACAACAGCACGTTCCACGACGTG
GCGTGGGTGAGCAAGGGCGGGTACAAGAGATGCATCGTGTCGCCCAAGGGGTTCGCCCCG
GTGTACCGCAACGGCTACGACGCGGTCGGGCTGCCCAGGGGCACGCACTACTTCATCTGC
GGCGTGCCGGGCCACTGTAGCGCCGGCATGAAGCTCGCCGTCACCGTCTACTGATGATTC
CATCGTCGTCCACCTCCGGAATGCATCGGGTGGCGTTGACCTAGAAGTCGCTCATCGTCC
TACGTCGGGCTGGCGTGTGCAATTTGTGTGTGTCTGCTTTGCGATTTGTGAGTTTGGCGT
ATGCATCACATGGAATGAGTACACCTGATGTTT

Homology of Contig U35_39078 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None