barSeed - Barley Seed Development Database

Probe CUST_26013_PI390587928

Source Contig U35_24183

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26013_PI390587928	Hv_44K_v2	GCTGCAAAAACAATCGTCTTCAGTCTTCATAGCTCAAAAAATGAGATGGCTATAGTAACC	37	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365877	3243	2e-24	1824 - 1883	100	60 / 60	minus	ABC15285 ABC45736
MLOC	MLOC_44497.6	2945	2e-24	1008 - 1067	100	60 / 60	plus	ABC15285
MLOC	MLOC_44497.1	619	2e-24	529 - 588	100	60 / 60	plus	ABC15285
MLOC	MLOC_44497.2	470	2e-24	380 - 439	100	60 / 60	plus	ABC15285
MLOC	MLOC_44497.7	2188	2e-24	251 - 310	100	60 / 60	plus	ABC15285
JLOC1	JLOC1_28842.5	2802	8e-25	1882 - 1941	100	60 / 60	minus
Harvest21	ABC18862	602	3e-25	38 - 97	100	60 / 60	minus
Harvest35	U35_24183	602	3e-25	38 - 97	100	60 / 60	minus

Contig Sequence (602 bp)

>U35_24183 602 Hv_44K_v2
ATTTACTTGTAATATATATTATCCAAAATAATAAAATGGTTACTATAGCCATCTCATTTT
TTGAGCTATGAAGACTGAAGACGATTGTTTTTGCAGCATGTTCAGGCACAAGGCAAACTG
AGGAAAAACAATATCGCATTAATCGAATGCTGCTACTAAAGAGTAAAAGGTACATTTAAG
AAAGCATAAACAATACTTATGTGACTTAAAACTAAAACATGTCCCATTAGGACAGTAATT
TCAAATTATGCTACATGTAAACGGATAAAATAGGTTCAAAATTAAGTAAATAATCAGGTT
AAAGGTCACACCGTCTAGGTTGCAAAGAGAGCTTTCACAAGACCTTTTCGGAAGTAATCT
CACCAGCTCCTTAATGACTGGAAGCAACCCAGAATGCTGCACAGCGATACTTCGTGTAAG
GAAGGGCAACATCAGTTCTGTAGGAGGTAAATATATATCTTCGTTGCTTAAATAGACTAC
AAAAAATCTGTTCAGTGCTACCCTTGTCTTAAAAGTTGAAATCAAGCATTGATGTCCACA
TCACATGGTGGTCGTATTTCCTTCTACTCAAGCTGAAACTAATGAATAGTTCAAACTTAT
GC

Homology of Contig U35_24183 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None