barSeed - Barley Seed Development Database

Probe CUST_26006_PI390587928

Source Contig U35_24189

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26006_PI390587928	Hv_44K_v2	TACTGCAAGCTAGTCTGGGACACCTGCAAGGACGCGACGATACACAACTCCCCATTCCAG	495	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355143	2837	7e-23	505 - 564	98	59 / 60	plus	None
MLOC	MLOC_57836.1	2815	7e-23	1923 - 1982	98	59 / 60	minus	None
JLOC1	JLOC1_37554.1	2874	4e-23	665 - 724	98	59 / 60	plus
Harvest21	ABC25589	648	3e-25	496 - 555	100	60 / 60	plus
Harvest35	U35_24189	648	3e-25	496 - 555	100	60 / 60	plus

Contig Sequence (648 bp)

>U35_24189 648 Hv_44K_v2
GGGAAGCTCGCTCGCTCTCTACAAAGCAGCTTCCTTTCCTGCCCCCCTCCTTCCAGCTCC
CACTGCACCCACCACGGTCCACGGATGCCGACGCCCACGACGGCCCGCCGCCGGCCGCCT
CCGGCCTGCTGCTGCTGCTGCCTCGTCTTGCTTCTCCTCCTCCCGGCCTGCCGCGCCTTC
CCGCTCTGCACCGACTCCAGGGCCCCGCTGCCGCCCAACGGGACGCTCGCCTTCTGCGGC
GACTCCGCCGGCGCCGCCGCATGCTGCGACGCCGACGACGACAAGGCCCTGCGCGACCAG
CACCGGGCCGCCAACGTCTCCGACGCCGCATGCGCCGCCGTCCTCAAGGCCATCCTCTGC
GCGAAATGCAATCCGTATTCTGCGGAGCTGTTCGACGCCGGGCCGAAGATCCGGACGATC
CCGTTCCTATGCAGCTCCGCCTCCTCGTCGGCGACATCTGCTCATCAGTCCAAGAAATCA
ACAGCAGTACAGGACTACTGCAAGCTAGTCTGGGACACCTGCAAGGACGCGACGATACAC
AACTCCCCATTCCAGCCCCCCCTGCAAGGAGGTGGGAGGCTGCCTANCTCATCGTCCAAG
CTCACCGATGCCTGGCAGTCCGAGAGCGACTTCTGCACGTCGTTCGGT

Homology of Contig U35_24189 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None