- Probe CUST_26003_PI390587928
- Source Contig U35_50454
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_26003_PI390587928 | Hv_44K_v2 | ATTGCTCCTTCCGGGGTCTGCTTGTGCTGAACCCTGAACTATTGTGGTAAATAAAATGTG | 31 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.029 | 1.337 | 1.533 | 1.157 | 0.468 | 0.502 |
| Raw | 7351.153 | 14552.187 | 14876.833 | 17674.807 | 2505.683 | 2956.583 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC52592 | 322 | 3e-25 | 32 - 91 | 100 | 60 / 60 | minus | ABC52592 |
| Harvest35 | U35_50454 | 322 | 3e-25 | 32 - 91 | 100 | 60 / 60 | minus |
Contig Sequence (322 bp)
>U35_50454 322 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAAACGGCGGGCCCCACATTTTATTTACCACAATAGTTCAGGG TTCAGCACAAGCAGACCCCGGAAGGAGCAATCACACCCCAACCAGCACGCCTGGAAAAAA CAAAAACCCATGTCCTATACCCTCGGGCCAAATTCGGCACAAGGGATGGATGCTGCTGGG CTGCATGTCTTTCCGGACTGATAAATGTTGCATGGGAGGGCAAGTCAAAATGATGAGTTG GGGGGGGAACACTAAAAAAAGGGGGTTGGGGAAAAATCGGGTTATTTTTCAAATAAACCA AGGCATTTTTTTTTTTCCGTTT
Homology of Contig U35_50454 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |