barSeed - Barley Seed Development Database

Probe CUST_2599_PI390587928

Source Contig U35_41390

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2599_PI390587928	Hv_44K_v2	CCCATGTTATGTCAGCTTTGATTCAGTTGCAATTGAGTTTGTGTTGTTATCAAGGAAGAA	56	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362648	1395	3e-21	1284 - 1343	97	58 / 60	plus	ABC04805
MLOC	MLOC_20206.1	2235	3e-21	2004 - 2063	97	58 / 60	minus	None
JLOC1	JLOC1_14013.1	554	2e-21	398 - 457	97	58 / 60	minus
Harvest35	U35_41390	551	3e-25	57 - 116	100	60 / 60	minus

Contig Sequence (551 bp)

>U35_41390 551 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAGCAGGCAGTTATTTAGTCATCATAACTGACAACAATATTCT
TCCTTGATAACAACACAAACTCAATTGCAACTGAATCAAAGCTGACATAACATGGGCAGA
TCAAATAATTTAATGGTGATGTCGTTTAGAGCGAGTGTATTTTCAGTGGAATAAATGAGT
CATCTGGAGCGAATTGGGATGCCTGCACACTGCTTTTTCTGACGTATCATATCAACACCG
TGGAGCTGCCTATCATGGCGCTTTGTTTTCTCTTGGCCTAGGGTGGACGGCCATTGATCC
GTTGGTCCTCGCCGTCCAGCAAGGCCCAGTACGACGGAGCGGCAGGGGAGGAGGCGCGTG
GTGGCTCGGTGTCGCGTGCTGGCTGCTTGTTGTTTCTACGCGTACCAACAGATTTGCCAC
CATCATTACACAGTTCAGAGCAGGAAAGAAGAAAGCACCAGAATTAGCCTGGCCTTGCCG
GGTCTTGAACACCGGGATGGCTACAAGAAAGAGCCTAGACAAAAAACTAACGTGTTGACC
TGTATTTAAAC

Homology of Contig U35_41390 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None