barSeed - Barley Seed Development Database

Probe CUST_25980_PI390587928

Source Contig U35_12562

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25980_PI390587928	Hv_44K_v2	AGACAATTATTGCACTATCTGGTCCTAAGACGAAGGTGCTGCTAGGATACGAGATCCGTT	613	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.681	0.970	1.606	1.828	0.792	0.833
Raw	110.821	250.974	353.277	669.967	96.569	111.641

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361020	1231	2e-24	650 - 709	100	60 / 60	plus	None
MLOC	MLOC_17093.5	1245	2e-24	628 - 687	100	60 / 60	plus	None
MLOC	MLOC_17093.4	1259	2e-24	791 - 850	100	60 / 60	plus	None
MLOC	MLOC_17093.1	1420	2e-24	803 - 862	100	60 / 60	plus	None
JLOC1	JLOC1_11806.1	1344	8e-25	715 - 774	100	60 / 60	plus
Harvest21	ABC52020	644	3e-25	556 - 615	100	60 / 60	plus
Harvest35	U35_12562	702	3e-25	614 - 673	100	60 / 60	plus

Contig Sequence (702 bp)

>U35_12562 702 Hv_44K_v2
GTATGGGCCTCCGCGACCCAGCTAGACGCCGCTCTCCCTCCTCCGGTCCTCCCCCAAACC
CTCGCCGCCGCAGCCTCGACGCCGCCGGAGCGCCGGCCGGGCAGAAGCTCGCCCGATTCC
ATGGACTACGACAGGCTGAACTCCCCGAGCACGTCGGCGATCACGCTGGAGCTGATGGGC
CACCGCCTGCATATTTCTCAGGACCCTAACTCGAAGCACCTCGGCACGACGGTATGGGAC
GCGTCGATGGTGTTCGCCAAGTTCCTGGAAAAGAATAGCAGGAAAGGTAGGTTTTGTCCG
TCTAAACTGAAAGGGAAAAGGGCGATTGAGCTAGGAGCTGGTTGCGGTCTAGCCGGGCTC
GGAATGGCATTGCTGGGTTGTGACGTCGTTACGACCGACCAGGTTGAGGTGCTCCCGCTG
CTCATGAGGAATGTTGAACGCAACAAATCGTGGATCGCGCAGTCTAATCCTGACTCAGGC
TCCTTTGGCTCAGTTACGGTTGCAGAATTGGATTGGGGAAACAAAGAACATATCAGAGCC
GTTGAACCTCCATTCGATTACATCATTGGAACTGATGTCGTTTATTCAGAACATCTATTG
CAACCTCTACTCGAGACAATTATTGCACTATCTGGTCCTAAGACGAAGGTGCTGCTAGGA
TACGAGATCCGTTCCACCACTGTCCATGAGCAGATGATGGAA

Homology of Contig U35_12562 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g57330.1	302	1e-110	protein\|expressed protein
Brachypodium v1_2	Bradi3g55460.1	299	5e-116
Arabidopsis v10	AT1G08125.2	322	5e-86	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr1:2539748-2542132 REVERSE LENGTH=322