barSeed - Barley Seed Development Database

Probe CUST_25977_PI390587928

Source Contig U35_12565

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25977_PI390587928	Hv_44K_v2	AGACTTTGAATTTGATTCCTCTGTTCTGTAAACTAGTGGACTGAGAATCCTATTCTAGAC	430	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72131.1	1421	2e-24	1045 - 1104	100	60 / 60	plus	ABC09758
Harvest35	U35_12565	507	3e-25	431 - 490	100	60 / 60	plus

Contig Sequence (507 bp)

>U35_12565 507 Hv_44K_v2
CATCCAAAACCAAAACCATGGTGTTGTGTGATTCCTGCAATATGCAGAGGAGGAACCAAA
CATGGTGATTAATTATAGTATTTGGTGATGCTAATAAGTTTGCTGGTGTGTGGACTATGG
TATGATCTTTCTTCCTTGACCTTTTTGATCTGGAGAAGGTTGTTGGGAACCAGCCTGGAT
CCTGGAGTTCATCATGCTTTCCTGCAGGGTCCAGATCACAAGGGAAGGGAGGGTACTCTT
TGTCATATGTTTGCTTGTTTGTTGTGTGAGACCATGAGCATCTTTTCCATGTCTCCTCAT
CTGGAGAAGGTTGTTGAAACATGCTCATCAAAGACTAATGATCTGAGGAGTTCATGGCCC
TCTCCCACTCTCTCTCTCTCTCTCTCTCCAATAATTCACAAGTAAACAAATAAGAAATGA
AAAAGGAAGGAGACTTTGAATTTGATTCCTCTGTTCTGTAAACTAGTGGACTGAGAATCC
TATTCTAGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_12565 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None