barSeed - Barley Seed Development Database

Probe CUST_25968_PI390587928

Source Contig U35_24548

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25968_PI390587928	Hv_44K_v2	AGGTCCAGCTGGGACATATGCTGGCTCAATCCTATTTGACTTATGGTACATTCAAACACT	740	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.784	1.904	2.691	2.042	0.645	0.605
Raw	590.136	2311.530	2743.353	3366.540	360.895	374.317

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58215.4	1664	2e-24	771 - 830	100	60 / 60	minus	None
JLOC1	JLOC1_37798.2	1421	8e-25	849 - 908	100	60 / 60	plus
Harvest21	ABC19568	800	3e-25	741 - 800	100	60 / 60	plus
Harvest35	U35_24548	800	3e-25	741 - 800	100	60 / 60	plus

Contig Sequence (800 bp)

>U35_24548 800 Hv_44K_v2
CAAGATGCTCCCTTTCCTCTGCTTCCTCGCCGCCTCCGCCGCCGCGCTGCGGCACCACCA
CGCGGCCGCCGACGTGCCCCCGTCCAACAAGCTCATCTTCATCCTCGCGGGGCAGTTCAA
CATGGCCGGCCGCGGCGGGGTGAGCGGCACGCACTGGGACGGCGTGGTGCCGCCGGACTG
CGCGCCCTCGGCCTCCGTCCTCCGCCTCTCCCCCTCGCTGCGCTGGGAGCAGGCCAGGGA
GCCGCTGCACCAGGGCATCGACGGCAACCGCACCTGCGGGGTCGGCCCCGGGATGTCCTT
CGCCAACGCCCTGCTCCGCTCCGGCGGGGCCCGCGGCGCCGCCGTCGCCCTCGTGCCCTG
CGCCGTCGGGGGCACGCGGATGGCCGAGTGGGCCAAAGGGTCGGAGCTGTACGCCGACAT
GGTGCGGCGGGCCAGGGTCGCCGTCGAGACCGGCGGCCGGATCGGGGCCGTGCTGTGGTA
CCAGGGCGAGAGCGACACCGTGCGCTGGGCCGACGCCAGCGAGTACGCGCGCCGGATGGG
CGCGCTCGTCCGCGACCTCCGCCAGGACTTCGCCATGCCACACCTCCTCCTCATCCAGGT
TGGGCTGGCATCAGGGCTTGGGCAGTATACTGAAGTGGTAAGGGAAGCTCAGAAGGGCTT
AAAACTTCGCAATGTGAGGTTTGTCGATGCGATGGGGTTGCCATTCCAAGACGGCCATCT
GCATCTTAACACCCAGGCTCAGGTCCAGCTGGGACATATGCTGGCTCAATCCTATTTGAC
TTATGGTACATTCAAACACT

Homology of Contig U35_24548 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g64030.1	260	3e-134	protein\|receptor protein kinase, putative, expressed
Brachypodium v1_2	Bradi1g00920.1	269	1e-79
Arabidopsis v10	AT4G34215.1	260	2e-77	Domain of unknown function (DUF303) \| chr4:16380203-16381192 REVERSE LENGTH=260