barSeed - Barley Seed Development Database

Probe CUST_25953_PI390587928

Source Contig U35_12573

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25953_PI390587928	Hv_44K_v2	ATATTTTACTACACGTTGATGCACAGAAGCCCAACTCTTTACCAGAGTGCCGCTTCCTAG	532	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62937.8	1891	2e-24	1241 - 1300	100	60 / 60	minus	ABC12552
MLOC	MLOC_62937.6	3702	2e-24	3052 - 3111	100	60 / 60	minus	ABC12552 ABC47717
MLOC	MLOC_62937.7	2614	2e-24	1944 - 2003	100	60 / 60	minus	ABC12552 ABC47717
MLOC	MLOC_62937.2	4103	2e-24	3385 - 3444	100	60 / 60	minus	ABC12552 ABC47717
MLOC	MLOC_62937.3	4697	2e-24	3656 - 3715	100	60 / 60	minus	ABC12552 ABC47717
MLOC	MLOC_62937.1	3801	2e-24	3469 - 3528	100	60 / 60	minus	ABC12552 ABC47717
MLOC	MLOC_62937.5	3626	2e-24	2976 - 3035	100	60 / 60	minus	ABC12552 ABC47717
JLOC1	JLOC1_41215.9	2617	8e-25	592 - 651	100	60 / 60	plus
JLOC1	JLOC1_41215.8	2733	8e-25	592 - 651	100	60 / 60	plus
Harvest21	ABC22388	600	3e-25	533 - 592	100	60 / 60	plus
Harvest35	U35_12573	600	3e-25	533 - 592	100	60 / 60	plus

Contig Sequence (600 bp)

>U35_12573 600 Hv_44K_v2
AAGCGGTGGGCGCGCGACGGCGGCGGCGGTTGGCCCTCTCGAGTCATGGTGCTACTCGCC
ACCCTCTCGCGCGATGCCGGAGCTCACCCGTGCCCTGCGCAGGAATTCCAGGGGGAAGCA
GGGCCGCCGCGCCCGCGCAGGCCGTCCGCGTTCTACAGCTCTGTGTTCGCGCAGATCGAA
GAGGTCGGGTGGGGGCAGCTGGTGAGCGCCGCAGGCGATGATGGCGTGTCGTGCCTCACC
TTCCGCGTCATGGATGAGCAGCGACGGCACCATTTACTGGAGATCACACTGCCCATGAAC
TACCCGACATGCCCTCCTTCAATTGCCGCGGATGTTCCTTATCTCCCCAAATTACAGTGG
TCAAAAAGCTCAAGACTGAAGGATGTTCTCTGCCAGTTCCAAGAGCACCTGAAGGTATTG
CAAGATTACTGNTCTACAATGGATGGCATTGACAAGGCCCTTTGGGTTGTCGATCCTACA
AAGCCGACATATGCTATGTCTCATCGTCGCATAGCTTTGGGTGATGATTGCTATATTTTA
CTACACGTTGATGCACAGAAGCCCAACTCTTTACCAGAGTGCCGCTTCCTAGGCACAGAT

Homology of Contig U35_12573 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g51680.2	309	8e-90	protein\|fanconi anemia L, putative, expressed
Brachypodium v1_2	Bradi1g10060.1	181	1e-63
Arabidopsis v10	None