barSeed - Barley Seed Development Database

Probe CUST_25941_PI390587928

Source Contig U35_24556

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25941_PI390587928	Hv_44K_v2	ACCCTGTAAGAGTGAAACATTATAACATGGAGTCATGGACAATAATTGAATATCTTGTCC	640	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.273	0.410	0.510	1.539	1.504	2.039
Raw	3.251	10.670	13.194	61.486	20.870	30.810

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15674.1	1149	2e-24	391 - 450	100	60 / 60	minus	ABC10223 ABC18851 ABC21456
MLOC	MLOC_15674.2	1232	2e-24	391 - 450	100	60 / 60	minus	ABC10223 ABC18851 ABC21456
MLOC	MLOC_15672.4	3408	2e-24	1868 - 1927	100	60 / 60	minus	ABC10223 ABC18851 ABC21456
MLOC	MLOC_15672.2	3022	2e-24	2017 - 2076	100	60 / 60	minus	ABC10223 ABC18851 ABC21456
MLOC	MLOC_15672.3	3017	2e-24	2012 - 2071	100	60 / 60	minus	ABC10223 ABC18851 ABC21456
JLOC1	JLOC1_10762.2	1235	8e-25	756 - 815	100	60 / 60	plus
JLOC1	JLOC1_10762.1	1043	8e-25	564 - 623	100	60 / 60	plus
JLOC1	JLOC1_10761.2	2610	8e-25	1926 - 1985	100	60 / 60	minus
JLOC1	JLOC1_10761.1	2605	8e-25	1921 - 1980	100	60 / 60	minus
Harvest21	ABC18851	745	3e-25	641 - 700	100	60 / 60	plus	ABC18851
Harvest35	U35_24556	745	3e-25	641 - 700	100	60 / 60	plus

Contig Sequence (745 bp)

>U35_24556 745 Hv_44K_v2
GGGCGACCGATCAAGCCCTCCCCAGCCCAGATGGCGGAGACCGCCGCCCGGACTCCGCCT
CCTGCTCCGCCGCCGGCGACTCGTACGAAGCTGTCGGGCGGGCTCGAGCCGCTGGACGCG
CGCATCAAGGAGCTGACCTCGTCGCAGGGAGAGCTGCTGGCCAGGATCCAGAAGCTCAAA
CAGGAGGTGCAGAATTGGCGCTCCAATGTCGAGGCGCAGGTCAAGACCTGCCACAACGAG
CTTGTGGAGGTGAAGGAGGGACTTGCTTCTGAAGTGCAGCACCTGAGATCCGACATCAAA
GAGATCAGGTCTGCCCTCCAGGAAGAGAAGGCGGGCTCGAAAACGGAGCAAACAGGGCAG
ACACAAGAAGACCAAGTACTCAAGACTGATGATGAAAAGACGGAACAACAAACTGCGGTG
AAAGCATGAAAAATTTGCGATCCCTGATTCAAACAGAACTTGTGCAGGTGGATGCTCAAC
TTAGTCATTTGGACCACCCAGAAAATTAGGCAAATACATAGTACTAGCACATTAGGTCAG
GAGGGGTAGATATGTATATGAACTGGCTTGCACATCGCGCTTGCTTGCCACATACTACCA
CTATGTCGGTATCAGCAAACTGGAGTGCAGAGGTTTCAAGACCCTGTAAGAGTGAAACAT
TATAACATGGAGTCATGGACAATAATTGAATATCTTGTCCCAGATCTATATACCTTGTAT
TTTGAAAGCATACTTAATTAAGAGA

Homology of Contig U35_24556 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None