barSeed - Barley Seed Development Database

Probe CUST_25938_PI390587928

Source Contig U35_24558

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25938_PI390587928	Hv_44K_v2	CTGTATGAGACAGACATGGCCATGTATGACATTTAGAAAAACGAGTAAAAATAGGGGAAC	577	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.108	2.021	0.886	0.865	0.874	0.697
Raw	56.893	29.630	10.906	17.132	4.837	4.684

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22363.1	983	2e-24	63 - 122	100	60 / 60	minus	ABC24400
JLOC1	JLOC1_15505.1	961	8e-25	766 - 825	100	60 / 60	plus
Harvest21	ABC24400	432	3e-25	314 - 373	100	60 / 60	plus	ABC24400
Harvest21	ABC18872	692	3e-25	578 - 637	100	60 / 60	plus
Harvest35	U35_24845	432	3e-25	314 - 373	100	60 / 60	plus
Harvest35	U35_24558	692	3e-25	578 - 637	100	60 / 60	plus

Contig Sequence (692 bp)

>U35_24558 692 Hv_44K_v2
CCCAGAGGCCGAGAGAGATCCAAGCACAGGCCGGCCGGCCGGACGACACCGATCGAGAAG
GAGGAGGAGACATGGTGCGCGGGAAGCTGGAGGTGCTGCTCGTCTCTGCCAAGGGACTCG
ACGACTCCGATTTCTTCAATAGCATGGACCCGTACGTGATCCTCACCTGCCGCAGCCACG
AGCAGAAGAGCACCGTCGCATCAGGAGCAGGAAGCGAGCCTGAGTGGAACGAGACCTTCG
TCTTCGCCGTCTCCGGCAACGCTCCGGAGCTCAGAGTCAAGATCATGGACAGCGACGCCT
TCTCGGCCGACGACCTCGTCGGAGAAGCATGCATCCCGCTTGAGGCGGTGTTCCAGGAGG
GCAGCCTGCCGCCGGCCGTGCACCGGGTCATCAAGGACGAGGAGTATCGCGGGGAGATCA
AGATCGCACTCACCTTCACCCCGGCAGAGGAAGACGAGGAGGAGGAGAGCTACGGCGGCT
GGAATCAGTCCACCTGAAAAAGGCTAGCGAGCCAGCAAGATGGTGCTGCATGTCTATCAT
AATGTAATGTATAGAAAGGCTTTCGATCTCCTTGATGCTGTATGAGACAGACATGGCCAT
GTATGACATTTAGAAAAACGAGTAAAAATAGGGGAACAAATATGTATCGATGAAATACTA
ATTAAGCAATTCACCGCATCATTTTGCAATGC

Homology of Contig U35_24558 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58570.1	146	1e-65	protein\|C2 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g26490.1	158	3e-62
Arabidopsis v10	AT1G63220.1	147	3e-53	Calcium-dependent lipid-binding (CaLB domain) family protein \| chr1:23449017-23450244 FORWARD LENGTH=147