- Probe CUST_25935_PI390587928
- Source Contig U35_36530
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25935_PI390587928 | Hv_44K_v2 | TGTCAGTGGCCATTTTTTGTACTTTGCGGAACATATGTCATAATTGTAACAGGGTTACAA | 418 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.161 | 0.134 | 0.362 | 2.375 | 4.034 | 8.239 |
| Raw | 3.292 | 3.396 | 16.296 | 162.875 | 96.044 | 212.074 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_49893.1 | 544 | 8e-25 | 471 - 530 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC31606 | 534 | 3e-25 | 419 - 478 | 100 | 60 / 60 | plus | ABC31606 |
| Harvest35 | U35_36530 | 534 | 3e-25 | 419 - 478 | 100 | 60 / 60 | plus |
Contig Sequence (534 bp)
>U35_36530 534 Hv_44K_v2 GCATCGTTCCAAAATTCAATCCAGGAGAACATGTCAACAAGAGAGGTGAACCAGGAGGCG AGGTAGAGTAACAGGCTATGGAGCTACTATTGTACCTCGCCTTGTCCAAGCAACTTCATG GAGGCAATTATTTCCTCTTTCATCCTTATAGATTCCTAGTTTCCTATCCAGGGGAACTTC TCCGATCACCATCCACAACACAAGCAGCAAATATTTGTAGCTAGGCACACATCAAGGATA TTGAATGATGTCTAGAGCATAATGACCAAGATGAAGCGCTACACTTTGTCGAGCGGATTC CTTGTTGGTACAAACTAGAAAATATGCAGAGCTCTTCAACAACATTGATACAATGCTACT AGATTGGACTGAAAATAATGGTGTACGCTTTTTTCTTGTTTTTTGTTGCAAAAAGAATTG TCAGTGGCCATTTTTTGTACTTTGCGGAACATATGTCATAATTGTAACAGGGTTACAATT TTTCACTTTTGATGATAACAAATTGCTATTTGGTTGGAAAAAAAAAAAAAAAAA
Homology of Contig U35_36530 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |