barSeed - Barley Seed Development Database

Probe CUST_25927_PI390587928

Source Contig U35_36537

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25927_PI390587928	Hv_44K_v2	AGATATTGTTGTGCCTCAAGCTACCGAAGCAATTCCTGAAGATGGCAGCAAATCAGCAGA	122	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58445.2	3545	2e-24	2071 - 2130	100	60 / 60	minus	ABC16676
JLOC1	JLOC1_37971.2	3613	8e-25	1359 - 1418	100	60 / 60	plus
JLOC1	JLOC1_37971.1	3516	8e-25	1359 - 1418	100	60 / 60	plus
Harvest21	ABC31612	639	3e-25	123 - 182	100	60 / 60	plus
Harvest35	U35_36537	639	3e-25	123 - 182	100	60 / 60	plus

Contig Sequence (639 bp)

>U35_36537 639 Hv_44K_v2
GAGAGGATGCTGGCTTCTTCGGTTGCAACGGCCCCTGCCATGCCTGAGAATTCCATTCCA
CAAGATGATGAACTGGTTCTTGAAGATACTGCCGAAACTGGAGATTTCAGGACCGATGAA
GGAGATATTGTTGTGCCTCAAGCTACCGAAGCAATTCCTGAAGATGGCAGCAAATCAGCA
GAGGTGGAGACTAACTGCGAGGTGTCAATCGGGAGCGATATCTGCGAGCAGGAGCAAGAC
GGCCATGGTGCTCCGTTTCAAGAACTGGTGGCGCTAGAGGAGCTGTTTTCTCCATTGGAA
TACGCAGATGACCGGACATCACCGCTGCAAATCCGCCATGAAACAGCCCCAGCTGAGCAA
GAAGCGAGTGAAGCAGAGCATGAGGTGACGGCCAGCCGGAGATTTGAGTACCAATCGAAT
GACCAGAACGAGGAGGACGAAGACAGGGCACCGGAGACGCCCACCTACAGCTTTGCTGCC
CAAAACTCCGGCAAAAGGTTCTTGCTCGAGAGGAAGCGGTCGCTGTCCCTTTCCTTGGAT
GGAAGCGTGTCGAGCGAGGTCGAGTGCGCCGAGCCTTCCACCGTCGAGCAGCTGAGATCC
GCGTTGCAAGCGGATCGAAAGACGCTCAGCGCCATGTAC

Homology of Contig U35_36537 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g15410.1	901	3e-59	protein\|expressed protein
Brachypodium v1_2	Bradi1g67530.2	845	4e-71
Arabidopsis v10	None