barSeed - Barley Seed Development Database

Probe CUST_25926_PI390587928

Source Contig U35_36539

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25926_PI390587928	Hv_44K_v2	CACTGGCTCCTGGTTCTGTTTTTGTATAATTGTTCTTGATATTTTCGTAAGGATAATCGT	34	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.965	1.808	1.333	0.618	0.286	0.249
Raw	130.138	93.798	61.545	44.660	6.151	5.547

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_36539	707	3e-25	35 - 94	100	60 / 60	minus

Contig Sequence (707 bp)

>U35_36539 707 Hv_44K_v2
TTTTTTTTTTTTTTTTTAACACACCAACCAACTAACGATTATCCTTACGAAAATATCAAG
AACAATTATACAAAAACAGAACCAGGAGCCAGTGGCAGGTGAAGCAGAGGGCATGAAGCC
TCCAGGCAGAGCACAACAAGCATAGATAACAAGAGGTCTTATCAGCAGGTAAAGACGGCA
TCTCCAAGCTCCAGTTACATGGCATCCCTGATACACCGATCCAGTACAAAACCACAGCAA
ACTTTTTGTTGATTCACTCCAGCCAAAAAAAAACAGTTTCTGATCTTTGTTTCGACAAGC
TCCAAGAACTTTCTGACAGTTTCTGCTACCGGCTACAAAGGGGCTGCGGAAGGATAGGTG
GCGACAACACTACTCTTCCTTGATGGCGCCCTTGTCGCTGACATAGATGCCGTCCAGGAA
CTTCCTGATGTCCTTGTTCTTCACGTGGCATTTCTGGTTGATCAGGGCAGCAGAGCGGGA
GACAAGCTCAATGTCATTGCCATCCAGGACGATCTCGTCCTTGACCTTCTCGGACCGCAG
GATTGTCACACCGTCAAGCATGTCAACTTTCCTTACCTTTTTTTCTCCGAGGAAGTTCCT
GATCTCGATGCCGCGGTTGGCTGCGGTGATGGATGCGTTGATGGGGAAGTGGGCGTAGAC
GAAGCGCATCTTGTATCGGAAGCCCTTGGTGACGCCGGTGATGAGGT

Homology of Contig U35_36539 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g31180.1	191	2e-64	protein\|ribosomal protein L6, putative, expressed
Brachypodium v1_2	Bradi3g00640.1	190	1e-67
Arabidopsis v10	AT1G33140.1	194	2e-59	\| Symbols: PGY2 \| Ribosomal protein L6 family \| chr1:12023360-12024502 FORWARD LENGTH=194