- Probe CUST_25925_PI390587928
- Source Contig U35_12580
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25925_PI390587928 | Hv_44K_v2 | TACAAGGCCGAGGCCCAGTCCGTGGACTTTCAAACTAAGGCCGCGGAAGTTACTGCTCAA | 417 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.178 | 0.787 | 0.825 | 0.951 | 1.302 | 1.581 |
| Raw | 5.571 | 3.582 | 5.926 | 8.271 | 3.877 | 6.557 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_49846.1 | 1248 | 2e-24 | 537 - 596 | 100 | 60 / 60 | plus | ABC01877 |
| MLOC | MLOC_19412.1 | 1460 | 3e-21 | 734 - 793 | 97 | 58 / 60 | minus | ABC01877 |
| JLOC1 | JLOC1_31880.1 | 1250 | 8e-25 | 537 - 596 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_13461.1 | 1539 | 2e-21 | 613 - 672 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC26227 | 483 | 3e-25 | 418 - 477 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_12580 | 483 | 3e-25 | 418 - 477 | 100 | 60 / 60 | plus |
Contig Sequence (483 bp)
>U35_12580 483 Hv_44K_v2 TTTCTCTCAACTCTAACAAAAGCCCAACCAACCACCACCCTAGCCATGGCAACTACCCTC GCCACTGACGTTTGCCTCTCCATTGTGCACCACACCCGCTTCGCCCTTCGCCTTGCCTCC ACTATCTCATCCAACCCCGAGTCTACCACCAACAATGCTGCATTCTCTCCGGTCTCCCTG CATGTCGCGCTCAGCCTCATCACTGCTGGCGCTGGGGGTGCCACTCGCGACCAACTCGTC GCTACATTGGGGGAAGGCGAGGCTGAGGGACTCCATGCGCTCGCCGAGTAGGTGGTGTAG TGCGTGCTTACCGATGCATCCAATGTCGGTGGTCCGCGTGTCTCCTTCGCCAATGGCGTC TTCGTGGACGCATCACTGTCGCTCAAGCCATCCTTCCACGAGCTTGCAATGTGCAAGTAC AAGGCCGAGGCCCAGTCCGTGGACTTTCAAACTAAGGCCGCGGAAGTTACTGCTCAAGTG AAC
Homology of Contig U35_12580 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |