- Probe CUST_25920_PI390587928
- Source Contig U35_12585
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_25920_PI390587928 | Hv_44K_v2 | AGTGAACCATATGGTTGTGAATCATGTTTTTGAGATTTCTTGGAGCTTTGCTGGTTCAAA | 381 | GeneList: brown MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.462 | 1.536 | 0.996 | 0.937 | 0.518 | 0.530 |
Raw | 1164.537 | 1849.148 | 1092.401 | 1609.988 | 312.633 | 348.594 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK364468 | 1689 | 2e-24 | 1602 - 1661 | 100 | 60 / 60 | plus | ABC11032 |
MLOC | MLOC_40318.1 | 1329 | 2e-24 | 130 - 189 | 100 | 60 / 60 | minus | ABC11032 |
JLOC1 | JLOC1_26353.1 | 1547 | 8e-25 | 71 - 130 | 100 | 60 / 60 | minus | |
Harvest21 | ABC11032 | 1661 | 3e-25 | 1588 - 1647 | 100 | 60 / 60 | plus | ABC11032 |
Harvest35 | U35_12585 | 457 | 3e-25 | 382 - 441 | 100 | 60 / 60 | plus |
Contig Sequence (457 bp)
>U35_12585 457 Hv_44K_v2 TTTCATCAGCTTTTCTGATTGATATCGTGAAGTGCACAGCCTCAATTTTCCGGGATGATG TAGTGTTAGCAGTTAGCATTTTGGAGAATTTGGCTAAAGTTTCTCGCTTTGACTTGATCA TCATGTGCCTCTCACCCATGCATAAATCTGAACTGCGGAAGATATGGGGTCAAACATTCC TTGCCGAGACTGCATCGCCAGATCAAGTTGAAATCCTCAGGCAGCTGCAAGCCAAGTACG TTCAAGGAGGATGGCATGATGACATGTTCACTTTGAGCTAAATGATGATGTTGTAAAGAC AGTTCCCTAGAGATCCCTCTGCCCTCTAGTCAACCAATACCGTAACACCCTTGTAGACTG AATGTTAAATCTAGTCGGAGCAGTGAACCATATGGTTGTGAATCATGTTTTTGAGATTTC TTGGAGCTTTGCTGGTTCAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_12585 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |