barSeed - Barley Seed Development Database

Probe CUST_2591_PI390587928

Source Contig U35_39080

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2591_PI390587928	Hv_44K_v2	GGTTACCCCACCGCACAGAGATGAACAAGAAGGTCTATAAGATCGGCAAGTCTGGACAGG	583	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363611	1439	7e-23	887 - 947	98	60 / 61	plus	ABC01623
MLOC	MLOC_37798.1	1467	7e-23	424 - 484	98	60 / 61	minus	ABC01623
JLOC1	JLOC1_24517.1	1710	4e-23	929 - 989	98	60 / 61	plus
Harvest21	ABC01623	1527	1e-23	877 - 937	98	60 / 61	plus	ABC01623
Harvest35	U35_39080	643	3e-25	584 - 643	100	60 / 60	plus
Harvest35	U35_14391	1557	1e-23	910 - 970	98	60 / 61	plus
Harvest35	U35_38559	680	6e-22	561 - 621	97	59 / 61	plus

Contig Sequence (643 bp)

>U35_39080 643 Hv_44K_v2
AGCGGCGATGTCGCACCGCAAGTTTGAGCACCCTAGGCACGGTTCCCTCGGCTTCCTCCC
CAGGAAGCGCTGCTCGCGTCACCGTGGAAAGGTGAAGTCCTTCCCCAAGGATGACCAACA
GAAGCCGTGCCACCTCACTGCCTTCCTGGGCTACAAGGCTGGAATGACCCACATTGTTCG
TGAGGTCGAGAAGCCTGGATCCAAGCTCCACAAGAAGGAAACCTGTGAGGCTGTTACCAT
CATTGAGACCCCTCCTCTTGTCATTGTTGGTCTTGTGGCATATGTGAAGACCCCTCGTGG
CCTTCGCACTCTCAACTCTGTCTGGGCTCAGCACCTTAGCGAAGATGTGAGGAGAAGGTT
CTACAAGAACTGGTGCAAGAGCAAGAAGAAGGCCTTCACAAAGTACGCCCTCAAGTATGA
CAGTGATGCAGGCAAGAAGGGTAAGGGGTATGAAGGTGTTGTCACTCGCTGGGGTGTCAC
CCGCCTTCCCCGCAAGACCCACAGGGGTCTCCGAAAGGTTGCCTGTATCGGTGCCTGGCA
TCCTGCTAGGGTGTCTTACACTGTTGCCCGTGCTGGTCAGAATGGTTACCCCACCGCACA
GAGATGAACAAGAAGGTCTATAAGATCGGCAAGTCTGGACAGG

Homology of Contig U35_39080 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g07010.1	390	4e-96	protein\|ribosomal protein L3, putative, expressed
Brachypodium v1_2	Bradi4g41680.1	390	4e-99
Arabidopsis v10	AT1G43170.1	389	2e-88	\| Symbols: ARP1, emb2207, RPL3A, RP1 \| ribosomal protein 1 \| chr1:16266992-16268631 FORWARD LENGTH=389