barSeed - Barley Seed Development Database

Probe CUST_25912_PI390587928

Source Contig U35_24560

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25912_PI390587928	Hv_44K_v2	TGCGGTCTATCTCATCTGGCGCCTCGTCAATTGCTCCGAAGACGTCCAGGCGGGCGACTA	1	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7694.1	2047	2e-24	1630 - 1689	100	60 / 60	minus	ABC13129
MLOC	MLOC_7694.2	1785	2e-24	1485 - 1544	100	60 / 60	minus	ABC13129
JLOC1	JLOC1_5085.1	1868	8e-25	1551 - 1610	100	60 / 60	minus
Harvest21	ABC19612	636	3e-25	2 - 61	100	60 / 60	plus
Harvest35	U35_24560	636	3e-25	2 - 61	100	60 / 60	plus

Contig Sequence (636 bp)

>U35_24560 636 Hv_44K_v2
CTGCGGTCTATCTCATCTGGCGCCTCGTCAATTGCTCCGAAGACGTCCAGGCGGGCGACT
ACGCGGCCGCGGCCGCGAAGCTCGCCGATGCGCGCATGATGCTCGCGACTAGTGTCTCCA
CGGGCACCGGGATCGGCCGCATCGCCAGCCACTTCGCCGCCGCGCTGACCCAGCGCCTCT
TCCCGGCGTCCCCGCACTCCTGCTTCGCGTTGGACGCCTCGCCGGAGCGCGCCGGCGAGC
TCTACCGCCAGTTCTACGACGCGGCGCCCTACCTCAAGTTCGCGCACTTCACGGCCAACC
AGGCCATCCTCGAGGCGTTTGATGGCTGCGACCGCGTCCACGTCGTGGATCTCGCCATCA
TGCAGGGCGTGCAGTGGCCCGCCCTCATCCAGGCCCTCTCCATCCGCCCCGGCGGCCCTC
CGTCCGTCCGCATCACCGGCGTCGGCTCCGCGCCTGCCGCCGACGAAGTCGGCCTCCGCC
TCGCCGAGCTCGCCCGCGCCGTGAACGTGCCCTTCTCCTTCCAAAGGGTCCCCGACGACA
GCCTGGACACGCTCCAGCCGTGGATGTTCCAGGTCCTCCCCGGAGAGGCGGTGGCCGTGA
ACTCCATCTGCCAGCTCCACCGCCTCCTGGTGGACC

Homology of Contig U35_24560 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49930.1	501	2e-67	protein\|GRAS family transcription factor domain containing protein, expressed
Brachypodium v1_2	Bradi1g47900.1	417	2e-69
Arabidopsis v10	None