barSeed - Barley Seed Development Database

Probe CUST_25904_PI390587928

Source Contig U35_50831

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25904_PI390587928	Hv_44K_v2	AAGAAGGAAACAGTGAAACCAAAGGCCAGACCTGCTCGTGTAAGATCAACACCTTCATCT	661	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.968	1.405	1.616	0.876	0.721	0.587
Raw	59.095	123.918	126.156	102.998	31.776	27.656

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_50831	745	3e-25	662 - 721	100	60 / 60	plus

Contig Sequence (745 bp)

>U35_50831 745 Hv_44K_v2
AATATCCTTTCACGAAAAGTTGCCGCCATTATTGACATCAGGTCCATCGCTTTCACTTTA
GAACAGGGGTACCCGGCCAGGTTGGAATGCATAGAATTTGATAACTAACTTAGGTTGGTT
CTGGTTCTTCATACACTCATGTGATTATCTAACTGGCCAGTCTCTTTGAACATCGAAAAG
AAATGCGCTTAAGGAGCTGCGGCAATGGCGTCATTGGTGCCCGGTGTCCTCGTCAAGCTC
CTTCACCATATGAACACGGATGGCAAAGTCGCAGGAAAGCATCGGGCGTCCCTTCTTCAG
GTTGGCAGCATCGGGCCACCACTTTCAGGGAGTGATCTCTTCACCAACCAAGGTTTCTAC
CTCAAGGGGTCCCATTCTTCCCATGCCACGTATGTGACCCTTCCCCAGGAACAACATGAT
CTCATCTTGAGCGACAATATTCGGTTGGGGCATTTCATCCATGTCCACCGCCTTGAGGGG
GCCACTCCAGTACCCATCCTTTGGGGAGTTCAGCCATTTCCTGGCCGTCATCCTTGCATC
GGCAACCCTGAGGACCTTGTGTTAACTAGCTCTTCAAAAGTTGTTGGCAACAAGAAAGCA
CAACCGGCCAATGGATCAAAAACAACCAATGGATTGAAAGATGCTGGTGCCTTGTCGCGA
GAAGAAGGAAACAGTGAAACCAAAGGCCAGACCTGCTCGTGTAAGATCAACACCTTCATC
TCCAACCAGTGTGTATTCTCTACCT

Homology of Contig U35_50831 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g34110.2	464	2e-73	protein\|expressed protein
Brachypodium v1_2	Bradi4g35280.1	735	2e-76
Arabidopsis v10	AT1G08760.1	748	2e-52	Plant protein of unknown function (DUF936) \| chr1:2805478-2808409 FORWARD LENGTH=748