barSeed - Barley Seed Development Database

Probe CUST_25899_PI390587928

Source Contig U35_36541

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25899_PI390587928	Hv_44K_v2	TACTATACCTGGATGGGTGATGGTCTTGCTGATGTTTGCTTGTCTGATCTTCTGAAAAAA	11	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.086	2.143	1.165	0.647	0.243	0.277
Raw	516.087	560.554	263.934	228.034	30.506	38.652

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11393.1	463	7e-23	134 - 190	100	57 / 57	minus	ABC01166 ABC31617
JLOC1	JLOC1_7541.1	416	4e-23	87 - 143	100	57 / 57	minus
Harvest21	ABC31617	588	3e-25	12 - 71	100	60 / 60	minus	ABC31617
Harvest35	U35_36541	588	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (588 bp)

>U35_36541 588 Hv_44K_v2
TTTTTTTTTTTTTTTTTCAGAAGATCAGACAAGCAAACATCAGCAAGACCATCACCCATC
CAGGTATAGTACCACCACAACTTCAGTTCTAGATAGATTTCAGTCTGCCAAAACCAACAA
CTTCAGTTCTTGCAACCAATTAGCCAACAAACCGTTGGCAATCACCCAGCACACGTACCA
CTACTACCACCACTACTTGCAGAGAGATAGGCAGAGTCAAGAGCACAGATACAGATACAG
AGACCAACTACAGGGAGGTGACGGACGCATCAGTCTAGGAGGAGGTGAACTTGGTGACGG
CCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGG
AGGTCTGGATCTCGCGGGAGGTGACGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCCG
ACTCGGCGGCGAGCTTCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGGACATGGCCT
TGGAGGAGATGCCGATGTCCGGGTGCACCTGCTTCAGCACCTTGAAGATGTAGATCTTGT
ACGTCTCCACGCCCTTCTTCGCCTTGCTGCCCTTCTTCCGGCCCCTCG

Homology of Contig U35_36541 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49860.1	153	7e-54	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g00510.2	126	7e-55
Arabidopsis v10	AT3G46030.1	145	3e-53	\| Symbols: HTB11 \| Histone superfamily protein \| chr3:16913614-16914051 REVERSE LENGTH=145