- Probe CUST_25892_PI390587928
- Source Contig U35_36544
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25892_PI390587928 | Hv_44K_v2 | TTCCTTCGATCATCTTGTAACCCCGGGGTCCTGTTATACGTTTTCCTGTCCTTGTAAGTA | 50 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.295 | 1.715 | 1.255 | 0.778 | 0.258 | 0.241 |
| Raw | 100.693 | 211.381 | 133.409 | 135.071 | 15.256 | 15.356 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC31625 | 412 | 3e-25 | 51 - 110 | 100 | 60 / 60 | minus | ABC31625 |
| Harvest35 | U35_36544 | 412 | 3e-25 | 51 - 110 | 100 | 60 / 60 | minus |
Contig Sequence (412 bp)
>U35_36544 412 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGAAAACCAACACAATATTTTTATTTGGGGGAGTACTTACAAG GACAGGAAAACGTATAACAGGACCCCGGGGTTACAAGATGATCGAAGGAACTAAACAGGA AAGAGTAATTGGAGGTCATAAAAAGGACTTCATCCTGGTATCTCTTTTCAAGGGGCGGGA TACAGCCTGGACCTGGTCACTTGAAACCACACGTATTGGCCCGATTTTTACAGAAACATA TTTTCCTGGAAAAAAAATTTTTTGACTTACTTGACCCTTTGGAAACGATTTTTGAAAAAC CGATTCAACGGGATCAACCATAAAATGGGCAAAATTTTCACCTCCAGGACCAATTGGTGG AAATCCTTTGGCTGGGGGGGATGGGGTCACCTTTTGATCCAAAACAAGCCAT
Homology of Contig U35_36544 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |