barSeed - Barley Seed Development Database

Probe CUST_25888_PI390587928

Source Contig U35_36547

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25888_PI390587928	Hv_44K_v2	TAAATCTAGGACGGCACAATTCGCGATTGCATGCCTATCCTAGTTAACCGCTGAATCTTG	179	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80799.1	638	2e-24	160 - 219	100	60 / 60	plus	ABC14388 ABC14389 ABC31634
JLOC1	JLOC1_53792.1	435	8e-25	69 - 128	100	60 / 60	plus
Harvest21	ABC31634	639	3e-25	180 - 239	100	60 / 60	plus	ABC31634
Harvest35	U35_36547	639	3e-25	180 - 239	100	60 / 60	plus

Contig Sequence (639 bp)

>U35_36547 639 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAGAACGGGAGTAACACTGCTAGCAGAACTTCAGACAAATTTC
CTGGTGGATCTTCATCGAATCCACGATACAAAACGATAGTAAACGATAGTTGCGCTACAA
TTGAAGAAAATTAAACGATACTGGATTTCTGGAATTGAAGAAAAGTAAAAGAGCTGTGAT
AAATCTAGGACGGCACAATTCGCGATTGCATGCCTATCCTAGTTAACCGCTGAATCTTGC
ACGGCCGGGGAGATGGACTGATCCCCGCCGTCGCGTTTCACGTCGCCGACGTGATTGACG
TCCGGTCCGATCTCCTCTGCGTGAGGAACCGATCCAGCTACCTCAGGAGCGACTGAGGCA
GCAGCCTTCTCCATCTCCAGAAGCTTCTTGGCCCAGCGCCGGATCGCCGTCGCCTTCTCC
TCGGTCCCCCAAGCACCGAGAGCTTCTCCTTCCAAGCCTAGGCCGGCGGCCGCGAGAGCG
GCAGCCTTGTCAAGCACCTCGGTGGCGGTGCTTGTCAGCTTGAACTCCATGGCGAACTCA
GGAAGCGGGGCGCGGATGTCGTGCTCAGGGGTCATGGCGCGGAGGGGTATGGGCTGGCTT
GGAGCGCGAGGAAGGAGGGGTTCCTGCTGAGTGGCTCGT

Homology of Contig U35_36547 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None