- Probe CUST_25882_PI390587928
- Source Contig U35_12594
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_25882_PI390587928 | Hv_44K_v2 | TGTCCCTCTCCATTATTATTCATAGTAATGTGCTCCTCGCTGAGCTTTATGATTAAAAAA | 197 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.192 | 2.182 | 1.088 | 0.874 | 0.592 | 0.646 |
| Raw | 90.233 | 61.744 | 32.988 | 40.944 | 9.623 | 11.641 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC26511 | 268 | 3e-25 | 198 - 257 | 100 | 60 / 60 | plus | ABC26511 |
| Harvest35 | U35_12594 | 268 | 3e-25 | 198 - 257 | 100 | 60 / 60 | plus |
Contig Sequence (268 bp)
>U35_12594 268 Hv_44K_v2 TGCTCTTGGTTTTCTACGTGGGAGTTGGTCCGGATAACATATCTTAACGAGGGATATAAA AGGGCGAAGGTCAATGAAATGGGGTCCTTATAGGTATCTGCCCATGTTCAATCACTGAAG TAATGAATCTAAACAAGAAAACGAAGTAGAAGTGTCTAATATATTTCTATATCTCTTTGC TCAGTTTTCCCCTTTAATGTCCCTCTCCATTATTATTCATAGTAATGTGCTCCTCGCTGA GCTTTATGATTAAAAAAAAAAAAAAAAA
Homology of Contig U35_12594 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |