barSeed - Barley Seed Development Database

Probe CUST_25881_PI390587928

Source Contig U35_12595

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25881_PI390587928	Hv_44K_v2	TAAATAGAACACAGATCAAAGGGGGTAACACATGGTAGTGATCACAAACGGTGAGCTACA	451	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52752.1	1735	7e-23	269 - 328	98	59 / 60	plus	None
JLOC1	JLOC1_33821.1	1714	4e-23	1325 - 1384	98	59 / 60	minus
Harvest21	ABC23812	544	3e-25	452 - 511	100	60 / 60	plus
Harvest35	U35_12595	545	3e-25	452 - 511	100	60 / 60	plus

Contig Sequence (545 bp)

>U35_12595 545 Hv_44K_v2
CGTCTGTCCTACGAACAGTTTGCTGCTTTCCTCGCCAACATCAAGGAGCTCAACGCTCAC
CGGCAATCCCAAGAGGTAACTGGGAACGCTTTCCAGCTCGATCCGTGGTTTCTTTCGGAT
TCAGATCTTGAGGTATAGTACAATATTGCTGTGGTGTTGGTGCAGGAGACGCTCGACAAG
GCGGACCAGATCTTCGGCGCAGAGAACAAGGACCTCTTCGTCTCGTTTCAGGGCCTGCTT
AGCCGTAGCCTCACGTAACACACACAAACACACACCTGTTGCCGCAATGTATACCACAGC
AGAGTATTATTAAGTGCACTTTATCACAAAAGAAAAGAATAATCACCATTTCAATATCAC
ACGAAGAACTGCTCCTGTCAGATATAGATTATAGACCCTGGAGCAGGTTGTGTTTTACGC
TCCTTATTGTAATCGAGGCGATTTTGCGCGATAAATAGAACACAGATCAAAGGGGGTAAC
ACATGGTAGTGATCACAAACGGTGAGCTACAGAGCTGCACACCAAGATTGAACAGGGTTT
ACTTG

Homology of Contig U35_12595 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None