barSeed - Barley Seed Development Database

Probe CUST_2587_PI390587928

Source Contig U35_39087

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2587_PI390587928	Hv_44K_v2	TATTCATCATTTATGACAGAAGAGGCTGCTGTTTTTGATAACGCAGCTGAGTACCGTCCT	506	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373109	3028	2e-24	1689 - 1748	100	60 / 60	plus	None
MLOC	MLOC_18922.1	1036	2e-24	928 - 987	100	60 / 60	minus	None
MLOC	MLOC_18922.2	3645	2e-24	3257 - 3316	100	60 / 60	minus	None
MLOC	MLOC_18922.4	3027	2e-24	2919 - 2978	100	60 / 60	minus	None
MLOC	MLOC_18922.3	3873	2e-24	3485 - 3544	100	60 / 60	minus	None
MLOC	MLOC_18922.6	4200	2e-24	3817 - 3876	100	60 / 60	minus	None
JLOC1	JLOC1_13112.2	3637	8e-25	47 - 106	100	60 / 60	plus
JLOC1	JLOC1_13112.1	3109	8e-25	43 - 102	100	60 / 60	plus
Harvest35	U35_39087	614	3e-25	507 - 566	100	60 / 60	plus

Contig Sequence (614 bp)

>U35_39087 614 Hv_44K_v2
TGACAGATTCTCCTTTGGAAACAGTTATGAATCAGGACAACAAACTCTTGGAGGAGGGAG
ACCTGGTTCCAAATGTTGATGAGGCACCATCCGAGGAGAGACCCATATTCTCATCGATGC
AAATGCACTCTGGAAGGCATGATTTGCTCCTTTCTGACTGTAGAGAAATGTGGGATTCTG
ACTGTAAGATAAATGCCCCAGTGGCAGAGGAGATCCTTTGTATGAAAAAGCACCACAGAC
GTATAAATTTTTTCTGCCTAGATTCTGAAAATGACCAAGTACAAGCAACTCAAGCGAATG
ATTGCTTCAGTCGATCCTGCCCTGTTATTCTTCTGAAACATGCTAAAGAAAGGTGGTCCA
TTATTGTGCCTTTGAGCTGGGTAAAGCCCTTTTGGCTCTTTCTAGTATCTCATGGTGCAC
ATGCGATTGGCTTAAGAGAGAGACGGTGGATTGCATCAAAGTTAAAGATACCATGCTTCC
CTTATGATTACCCAGACAGCAAAGCATATTCATCATTTATGACAGAAGAGGCTGCTGTTT
TTGATAACGCAGCTGAGTACCGTCCTGCTGCCAAGAGACCTCCAAGAGTTCCTTTACCTC
CATGGCATTGTATC

Homology of Contig U35_39087 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g45250.2	658	2e-93	protein\|ribonucleases P/MRP protein subunit POP1 containing protein, expressed
Brachypodium v1_2	Bradi4g09997.1	849	1e-111
Arabidopsis v10	None